| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3920778 = | 36 (0.890) | 3 (0.090) | 3/146 | 2.7 | 8.5% | coding (264/993 nt) | asnA | aspartate‑‑ammonia ligase |
| ? | NZ_CP009273 | 3920817 = | 34 (0.980) | coding (303/993 nt) | asnA | aspartate‑‑ammonia ligase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGAAAGCTCTGCCTGATGCCCAGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGA > NZ_CP009273/3920689‑3920867 | gTGAAAGCTCTGCCTGATGCCCAGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCG < 2:292302‑M1/90‑1 (MQ=255)gTGAAAGCTCTGCCTGATGCCCAGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCG < 1:366398‑M1/90‑1 (MQ=255)agaattgacgctcaccgtcgcccattacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgg > 2:421277‑M1/90‑90 (MQ=255) aGCTCTGCCTGATGCCCAGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGA < 2:1114904‑M1/90‑1 (MQ=255) ctctGCCTGATGCCCAGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAG > 2:587552‑M1/1‑90 (MQ=255) tcaccgtcgcccattacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCt > 2:520253‑M1/79‑90 (MQ=255) gCCTGATGCCCAGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTCCAGCGCGGGCGAAGGGCT < 1:260920‑M1/90‑1 (MQ=255) cTGATGCCCAGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 2:311513/90‑1 (MQ=255) tGCCCAGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac < 2:1039814/90‑1 (MQ=255) gCCCAGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACg < 1:1028333/90‑1 (MQ=255) cAGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGcac > 1:252325/1‑90 (MQ=255) ttCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATg < 2:409438/90‑1 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGa > 2:1042696/1‑90 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGa > 1:900884/1‑90 (MQ=255) aaGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGA > 2:228249‑M1/1‑67 (MQ=255) aaGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGA < 1:228249‑M1/67‑1 (MQ=255) gTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTttcatgtgcgtgtacagccctt > 1:826877‑M1/1‑68 (MQ=255) gTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagccctt < 2:350357‑M2/90‑8 (MQ=255) gTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagccctt < 2:393649‑M2/90‑8 (MQ=255) gTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagccctt < 2:726255‑M2/90‑8 (MQ=255) gTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagccctt < 1:47176‑M2/90‑8 (MQ=255) agtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGc < 2:29321‑M1/37‑1 (MQ=255) ttcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagcccttcgccc > 1:570981‑M2/1‑78 (MQ=255) ttcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagcccttcgccc > 1:271914‑M2/1‑78 (MQ=255) actggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt < 2:938584‑M1/43‑1 (MQ=255) tGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGca < 2:427753/67‑1 (MQ=255) tGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGca > 1:427753/1‑67 (MQ=255) tGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATg < 2:229263/90‑1 (MQ=255) aaGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAc < 2:553940/90‑1 (MQ=255) gTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagcccttcgcccgcgctgaagtcg > 1:131941‑M2/1‑66 (MQ=255) aaaCGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCtt > 2:1014233/1‑90 (MQ=255) cAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagcccttcgcccgcgctgaagtcgtgttgcccta > 1:444499‑M2/1‑56 (MQ=255) cAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCg > 2:1082998/1‑90 (MQ=255) gtgcaacggagaaagacggtcttcatcgGGGCGAAg > 1:1133773‑M1/29‑36 (MQ=255) gtgcaacggagaaagacggtcttcatcgGGGCGAAg < 2:1133773‑M1/8‑1 (MQ=255) ttAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCAc < 1:23751/90‑1 (MQ=255) tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTttcatgtgcgtgtacagcccttcgcccgcgctgaagtcgtgttgccctaaggtctg > 1:444499‑M1/1‑34 (MQ=255) tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagccctt < 2:635894‑M2/56‑8 (MQ=255) tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagccctt > 1:635894‑M2/1‑49 (MQ=255) tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACt < 2:626359/90‑1 (MQ=255) tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACt > 1:194631/1‑90 (MQ=255) tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACt < 1:726255/90‑1 (MQ=255) tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACt < 2:768230/90‑1 (MQ=255) tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACt < 2:194631/90‑1 (MQ=255) tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACt > 2:246838/1‑90 (MQ=255) tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACt > 1:481356/1‑90 (MQ=255) tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACt < 1:246838/90‑1 (MQ=255) aGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTc < 1:1042696/90‑1 (MQ=255) cAACACGACTTCAGCGCGGGCGAAGGGCTGTACCCGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTc < 1:294515/90‑1 (MQ=255) cAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTc < 1:106164/90‑1 (MQ=255) cAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTc < 1:587552/90‑1 (MQ=255) cAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTc < 2:360530/90‑1 (MQ=255) cAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTc > 2:49766/1‑90 (MQ=255) acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTc > 1:469507/1‑88 (MQ=255) acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTc < 2:469507/88‑1 (MQ=255) acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTa > 1:323136/1‑90 (MQ=255) acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTa < 1:131921/90‑1 (MQ=255) acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTa > 2:910633/1‑90 (MQ=255) acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTa > 2:931575/1‑90 (MQ=255) cGACTTCAGCGCGGGCGAAGGGCTttcatgtgcgtgtacagcccttcgcccgcgctgaagtcgtgttgccctaaggtctgacgtttccac > 1:131941‑M1/1‑24 (MQ=255) aCTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTg > 1:918245/1‑90 (MQ=255) atcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCagg < 2:483452‑M1/86‑2 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg < 1:910633/90‑1 (MQ=255) gggCGAAGGGCTttcatgtgcgtgtacagcccttcgcccgcgctgaagtcgtgttgccctaaggtctgacgtttccacttcgccagtgaa > 1:570981‑M1/1‑12 (MQ=255) gggCGAAGGGCTttcatgtgcgtgtacagcccttcgcccgcgctgaagtcgtgttgccctaaggtctgacgtttccacttcgccagtgaa > 1:271914‑M1/1‑12 (MQ=255) GGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:51565‑M1/90‑1 (MQ=255) | GTGAAAGCTCTGCCTGATGCCCAGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGA > NZ_CP009273/3920689‑3920867 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |