| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4017585 | 53 (1.320) | 3 (0.080) | 3/154 | 2.8 | 4.8% | coding (672/783 nt) | tatD | 3'‑5' ssDNA/RNA exonuclease TatD |
| ? | NZ_CP009273 | = 4017640 | 70 (1.920) | coding (727/783 nt) | tatD | 3'‑5' ssDNA/RNA exonuclease TatD | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAAAATTACTGATCGAAACTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGGAGAAGATGCCGCATGGCTGGCTGCCACCACGGATGCTAATGTCAA > NZ_CP009273/4017500‑4017671 | aaaaaTTACTGATCTAAACTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAGCGAGCCAGCCCATc < 1:960428/90‑1 (MQ=255)aaaaaTTACTGATCGAAACTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATc < 1:741225/90‑1 (MQ=255)aaaaaTTACTGATCGAAACTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATc < 1:717567/90‑1 (MQ=255)aaaaaTTACTGATCGAAACTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATc < 1:818046/90‑1 (MQ=255)aaaaaTTACTGATCGAAACTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATc < 1:44243/90‑1 (MQ=255)aaaaaTTACTGATCGAAACTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATc < 2:380445/90‑1 (MQ=255)aaaaaTTACTGATCGAAACTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATc < 2:796251/90‑1 (MQ=255)aaaaaTTACTGATCGAAACTGATGCGCCGTATCTGCTCCCTCCCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATc < 2:141368/90‑1 (MQ=255) ttACTGATCGAAACTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGccc < 2:925828/90‑1 (MQ=255) gATCGAAACTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCatat > 2:641450/1‑90 (MQ=255) gATCGAAACTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCatat < 1:53026/90‑1 (MQ=255) tCGAAACTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATAttt < 2:12263/90‑1 (MQ=255) aaaCTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGc > 2:816523/1‑90 (MQ=255) aCTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCaa < 2:594293/90‑1 (MQ=255) aCTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCaa < 2:1055107/90‑1 (MQ=255) aCTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCaa < 1:115487/90‑1 (MQ=255) aCTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCaa < 1:509676/90‑1 (MQ=255) aCTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCaa < 1:555550/90‑1 (MQ=255) aCTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCaa < 2:848339/90‑1 (MQ=255) aCTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCaa < 1:1113807/90‑1 (MQ=255) gATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGt < 1:413866/90‑1 (MQ=255) gATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGt > 1:726669/1‑90 (MQ=255) gcCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTgc > 1:915835/1‑90 (MQ=255) gcCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTgc > 2:276645/1‑90 (MQ=255) gcCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTgc > 2:940633/1‑90 (MQ=255) gTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCatgcggcatcttctccacgccagtgcgcaata > 1:37217‑M1/1‑58 (MQ=255) tATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCAc < 2:218976/90‑1 (MQ=255) tATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCAc < 2:106030/90‑1 (MQ=255) tATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCAc < 2:459742/90‑1 (MQ=255) tCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTg < 2:1044970/90‑1 (MQ=255) tCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCatgcggcatcttctccacgccagtgcgcaatacgttgcaa > 1:840345‑M1/1‑50 (MQ=255) tCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTg > 2:718409/1‑90 (MQ=255) tCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTg < 1:796877/90‑1 (MQ=255) cTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGccc > 2:699917/1‑56 (MQ=255) cTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGccc < 1:699917/56‑1 (MQ=255) cTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGgag > 1:140165/1‑90 (MQ=255) cTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGgag > 2:213761/1‑90 (MQ=255) tCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCatgcggcatcttctccacgccagtgcgcaatacgttgcaaaata > 1:329216‑M1/1‑46 (MQ=255) tCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGgaga > 1:913203/1‑90 (MQ=255) tCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGgaga > 1:1066576/1‑90 (MQ=255) tCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGgaga > 1:103893/1‑90 (MQ=255) tCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGgaga > 1:894905/1‑90 (MQ=255) gATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGGAGAAGAt < 2:286119/90‑1 (MQ=255) gATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGGAGAAGAt < 2:140165/90‑1 (MQ=255) cGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGGAGAAGATGCCGCAt > 1:172353/1‑90 (MQ=255) aaaGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGGAGAAGATGCCGCATggct < 2:199422‑M2/90‑5 (MQ=255) aaaGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGGAGAAGATGCCGCATggct < 1:201256‑M2/90‑5 (MQ=255) catcatCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGGAGAAGATGCCGCATGgctggctg < 1:452330/90‑1 (MQ=255) atcatcCCGGCGCAACGAGCCAGCCCATCTGCCCCatat < 2:1135323/39‑1 (MQ=255) atcatcCCGGCGCAACGAGCCAGCCCATCTGCCCCatat > 1:1135323/1‑39 (MQ=255) catcCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGGAGAAGATGCCGCATGGCTGGCTGcca < 2:67727/90‑1 (MQ=255) cGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGGAGAAGATGCCGCATGGCTGGCTGCCACCACg < 1:276645/90‑1 (MQ=255) cGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGGAGAAGATGCCGCATGGCTGGCTGCCACCACg > 2:532452/1‑90 (MQ=255) ggCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGGAGAAGATGCCGCATGGCTGGCTGCCACCACgg < 2:212301/90‑1 (MQ=255) aCGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTTCGCACTGGCGTGGAGAAGATGCCGCATGGCTGGCTGCCACCACGGATGCTa > 2:332224/1‑90 (MQ=255) gAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGGAGAAGATGCCGCATGGCTGGCTGCCACCACGGATGCTAAt < 2:263775/90‑1 (MQ=255) gAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGGAGAAGATGCCGCATGGCTGGCTGCCACCACGGATGCTAAt < 1:1154520/90‑1 (MQ=255) ccagccCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGGAGAAGATGCCGCATGGCTGGCTGCCACCACGGATGCTAATGTc < 2:726669/90‑1 (MQ=255) agccatgcggcatcttctccacgccagtgcgcaatacgttgcaaaatatggggcagatgggctggctcgttgcgccgggatgatggcttt < 2:199422‑M1/90‑87 (MQ=255) agccatgcggcatcttctccacgccagtgcgcaatacgttgcaaaatatggggcagatgggctggctcgttgcgccgggatgatggcttt < 1:201256‑M1/90‑87 (MQ=255) | AAAAATTACTGATCGAAACTGATGCGCCGTATCTGCTCCCTCGCGATCTCACGCCAAAGCCATCATCCCGGCGCAACGAGCCAGCCCATCTGCCCCATATTTTGCAACGTATTGCGCACTGGCGTGGAGAAGATGCCGCATGGCTGGCTGCCACCACGGATGCTAATGTCAA > NZ_CP009273/4017500‑4017671 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |