| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 2312726 | 21 (0.520) | 3 (0.080) | 3/154 | 2.8 | 12.5% | coding (630/2850 nt) | rcsC | two‑component system sensor histidine kinase RcsC |
| ? | NZ_CP009273 | = 2312743 | 23 (0.630) | coding (613/2850 nt) | rcsC | two‑component system sensor histidine kinase RcsC | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTCTCCATCCGGATGGTCTGCTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCGCTGATCCAGTAGAGGTTACTGCCGCTATCATCTTGTGGTGCATTTCGATATTTATTGATGCGTTCAT > NZ_CP009273/2312657‑2312832 | gTTCTCCATCCGGATGGTCTGCTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCgac < 1:188656‑M2/90‑4 (MQ=255) tctcCATCCGGATGGTCTGCTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCgacgc < 2:414254‑M2/90‑6 (MQ=255) tctcCATCCGGATGGTCTGCTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCgacgc < 1:1054468‑M2/90‑6 (MQ=255) tctcCATCCGGATGGTCTGCTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCgacg > 2:90929‑M2/1‑85 (MQ=255) tctcCATCCGGATGGTCTGCTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCgacg < 1:90929‑M2/89‑5 (MQ=255) tcCATCCGGATGGTCTGCTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCgacgcca > 2:383000‑M2/1‑83 (MQ=255) ccATCCGGATGGTCTGCTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCgacgccag > 2:1054468‑M2/1‑82 (MQ=255) ggTCTGCTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGAcc < 1:328474/90‑1 (MQ=255) gTCTGCTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCt < 1:496556/90‑1 (MQ=255) cTGCTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTc > 2:192506/1‑90 (MQ=255) tGCTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCg < 2:188656/90‑1 (MQ=255) cTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCGCt < 1:1095525/90‑1 (MQ=255) cTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCGCt < 2:746289/90‑1 (MQ=255) cTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCGCt > 1:315068/1‑90 (MQ=255) gACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATCCCCGACGCCAGGGCGCGGACCTTCGCTGAt < 1:980354/90‑1 (MQ=255) acacCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCGCTGATc > 2:714553/1‑90 (MQ=255) cacCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCGCTGATcc < 1:1081242/90‑1 (MQ=255) cacCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCGCTGATcc < 2:169318/90‑1 (MQ=255) acCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCgacgccagtttatctggcgaaccggttgca > 2:864485‑M2/1‑60 (MQ=255) cAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCgacgccagtttatctggcgcaccggttgcatgcgcttttgggtgt > 2:836856‑M2/1‑45 (MQ=255) cAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCGCTGATCCAGTAGAGGTTACTGcc < 2:604115/90‑1 (MQ=255) aCCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATCCCCGACGCCAGGGCGCGGACCTTCGCTGATCCAGTAGAGGTTACTGCCGc < 2:284877/90‑1 (MQ=255) aCCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCGCTGATCCAGTAGAGGTTACTGCCGc < 1:660315/90‑1 (MQ=255) ggTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCGCTGATCCAGTAGAGGTTACTGCCGCTat < 1:976632/90‑1 (MQ=255) cAGATAAACTGGCGTCAACGCGTAAAAATCCCCgacgccagtttatctggcgaaccggttgcaggcgcttttgggtgtcgagcagaccat > 1:211176‑M2/1‑33 (MQ=255) aaCTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCGCTGATCCAGTAGAGGTTACTGCCGCTATCATCTTGTGGTGc < 1:356480/90‑1 (MQ=255) ggCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCGCTGATCCAGTAGAGGTTACTGCCGCTATCATCTTGTGGTGCAttt < 1:414254/90‑1 (MQ=255) gCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCGCTGATCCAGTAGAGGTTACTGCCGCTATCATCTTGCGGTGCATTTc > 1:137391/1‑90 (MQ=255) cGTCAACGCGTAAAAATCCCCGACGCCAGGGCGCGGACCTTCGCTGATCCAGTAGAGGTTACTGCCGCTATCATCTTGTGGTGCATTTCg < 2:611211/90‑1 (MQ=255) aCGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCGCTGATCCAGTAGAGGTTACTGCCGCTATCATCTTGTGGTGCATTTCGAtatt > 1:335204/1‑90 (MQ=255) cccGACGCCAGGGCGCGGACCTTCGCTGATCCAGTAGAGGTTACTGCCGCTATCATCTTGTGGTGCAt < 2:888999/68‑1 (MQ=255) cccGACGCCAGGGCGCGGACCTTCGCTGATCCAGTAGAGGTTACTGCCGCTATCATCTTGTGGTGCAt > 1:888999/1‑68 (MQ=255) cGACGCCAGGGCGCGGACCTTCGCTGATCCAGTAGAGGTTACTGCCGCTATCATCTTGTGGTGCATTTCGATATTTATTGATGCGTTCAt > 2:835771/1‑90 (MQ=255) | GTTCTCCATCCGGATGGTCTGCTCGACACCCAAAAGCGCCTGCAACCGGTTCGCCAGATAAACTGGCGTCAACGCGTAAAAATACCCGACGCCAGGGCGCGGACCTTCGCTGATCCAGTAGAGGTTACTGCCGCTATCATCTTGTGGTGCATTTCGATATTTATTGATGCGTTCAT > NZ_CP009273/2312657‑2312832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |