| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3491440 | 39 (0.970) | 4 (0.110) | 4/152 | 2.5 | 9.5% | coding (254/1374 nt) | cysG | siroheme synthase CysG |
| ? | NZ_CP009273 | = 3491445 | 41 (1.140) | coding (259/1374 nt) | cysG | siroheme synthase CysG | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTAACCCTCGTCGAAGGGCCATTTGATGAAAGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGATGCGCCGAAAGCCGCCAGCTTTATTATGCCGTC > NZ_CP009273/3491357‑3491530 | gTTAACCCTCGTCGAAGGGCCATTTGATGAAAGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCa < 1:630495‑M2/90‑2 (MQ=255) ccTCGTCGAAGGGCCATTTGATGAAAGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCagcgcgt > 1:457490‑M2/1‑83 (MQ=255) cTCGTCGAAGGGCCATTTGATGAAAGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCagcgcgtc < 2:207923‑M2/90‑9 (MQ=255) tcgtcgAAGGGCCATTTGATGAAAGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCagcgcgtca < 1:954568‑M2/90‑10 (MQ=255) cgtcgAAGGGCCATTTGATGAAAGCCTTCTCGGCACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAg > 1:294995/1‑90 (MQ=255) cgtcgAAGGGCCATTTGATGAAAGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAg > 2:144073/1‑90 (MQ=255) cgtcgAAGGGCCATTTGATGAAAGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAg > 2:1026487/1‑90 (MQ=255) cgtcgAAGGGCCATTTGATGAAAGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAg > 2:418733/1‑90 (MQ=255) cgtcgAAGGGCCATTTGATGAAAGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAg > 1:410833/1‑90 (MQ=255) gtcgAAGGGCCATTTGATGAAAGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGc > 2:125675/1‑90 (MQ=255) gAAGGGCCATTTGATGAAAGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGaa < 2:595047/90‑1 (MQ=255) aaGGGCCATTTGATGAAAGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAg < 1:1033484/90‑1 (MQ=255) aTTTGATGAAAGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGa > 2:245883/1‑90 (MQ=255) tgatgaAAGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGc < 2:706930/90‑1 (MQ=255) aaGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCtcgtcg > 2:812926/1‑90 (MQ=255) aaGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCtcgtcg < 1:1140330/90‑1 (MQ=255) gCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCa < 2:267429/90‑1 (MQ=255) cTTCTCGACCCCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTACCCagcgcgtcatcatccgtcgctgcaatcgccagcca > 1:316920‑M2/1‑55 (MQ=255) cTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCAtc < 2:410833/90‑1 (MQ=255) cTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCAtc < 1:684906/90‑1 (MQ=255) ttCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCACTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCAtct > 2:116870/1‑90 (MQ=255) tctcGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCAtctt > 1:921134/1‑90 (MQ=255) ctcGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCagcgcgtcatcatccgtcgctgcaatcgccagccagca > 2:510604‑M2/1‑52 (MQ=255) acCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCa < 1:158215/79‑1 (MQ=255) acCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCa > 2:158215/1‑79 (MQ=255) ccTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCagcgcg > 2:325145‑M2/1‑45 (MQ=255) ccTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCagcgcg < 1:325145‑M2/51‑7 (MQ=255) ccTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACg > 2:267138/1‑90 (MQ=255) tgctgGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTg > 2:56015/1‑90 (MQ=255) gctggctgGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTgg > 2:992451/1‑90 (MQ=255) gctggcGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGa > 2:760484/1‑90 (MQ=255) ctggcGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGAt > 1:659851/1‑90 (MQ=255) tggcGATTGCAGCGACGGATGATGACGCGCTTACCCagcgcgtcatcacccgtcgctgcaatcgccagccagcaggtgtcgagaaggctt > 2:239716‑M2/1‑36 (MQ=255) gATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGATGCGcc < 1:1100331/90‑1 (MQ=255) cAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCa > 2:48809/1‑60 (MQ=255) cAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCa < 1:48809/60‑1 (MQ=255) gACGGATGATGCCGCCCTTACCCagcgcgtcatcatccgtggctgcaatcgccagccagcaggtgtcgagaaggctttcatcaaatggcc > 2:191460‑M2/1‑23 (MQ=255) aCGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGATGCGCCGAAAgccgcc < 1:826180/90‑1 (MQ=255) aCGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGATGCGCCGAAAgccgcc < 1:581535/90‑1 (MQ=255) cGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGATGCGCCGAAAGCCGCCa < 1:612544/90‑1 (MQ=255) gatgatGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGATGCGCCGAAAGCCGCCAGc < 2:213254/90‑1 (MQ=255) tgatgaCGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGATGCGCCGAAAGCCGCCAGCtt > 1:181824/1‑90 (MQ=255) aCGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGc < 2:1096243/37‑1 (MQ=255) aCGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGc > 1:1096243/1‑37 (MQ=255) gcgcTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGATGCGCCGAAAGCCGCCAGCTTTATTATg > 1:241386/1‑90 (MQ=255) cgcTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGATGCGCCGAAAGCCGCCAGCTTTATTATGc < 2:630495/90‑1 (MQ=255) cgcTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGATGCGCCGAAAGCCGCCAGCTTTATTATGc < 2:78419/90‑1 (MQ=255) cgcTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGATGCGCCGAAAGCCGCCAGCTTTATTATGc < 2:874563/90‑1 (MQ=255) cgcTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGATGCGCCGAAAGCCGCCAGCTTTATTATGc < 2:954568/90‑1 (MQ=255) tAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGATGCGCCGAAAGCCGCCAGCTTTATTATGCCGTc < 2:1076682/90‑1 (MQ=255) tAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCACATTTTCTGTAACGTGGTCGATGCGCAGAAAGCCGCCAGCTTTATTATGCCGTc < 1:224657/90‑1 (MQ=255) | GTTAACCCTCGTCGAAGGGCCATTTGATGAAAGCCTTCTCGACACCTGCTGGCTGGCGATTGCAGCGACGGATGATGACGCGCTTAACCAGCGCGTCAGCGAAGCCGCTGAAGCTCGTCGCATCTTCTGTAACGTGGTCGATGCGCCGAAAGCCGCCAGCTTTATTATGCCGTC > NZ_CP009273/3491357‑3491530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |