New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	3613238 =	NA (NA)	4 (0.110)	4/152	2.5	100%	coding (687/4236 nt)	rhsB	rhs element protein RhsB
	?	NZ_CP009273	3613252 =	0 (0.000)					coding (701/4236 nt)	rhsB	rhs element protein RhsB

TACCGGGTACTGACCGGGCTGGTGGACCGCTTCGGGCGCACACAGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTAC  >  NZ_CP009273/3613167‑3613296                                                                                      |                                             ttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCAcc                                          <  1:551442‑M2/5‑1 (MQ=255)     gcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGCg                                      >  1:89873‑M2/82‑90 (MQ=255)        cgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGCGTGa                                   <  2:240421‑M2/12‑1 (MQ=255)                         cagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGCGTGACGGATGGTGCCTGGCGt                  <  2:608677‑M2/29‑1 (MQ=255)                               cagccggaagtgccgccaggcacaatccgtcccgccggtgatttcgccgctgaatTCACCGGCGTGACGGATGGTGCCTGGCGTCACTTc            <  2:955744‑M2/35‑1 (MQ=255)                                agccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCAcc                                          <  1:148169‑M2/5‑1 (MQ=255)                                agccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCAcc                                          >  2:148169‑M2/55‑59 (MQ=255)                                         tgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTAc  <  2:503087‑M2/45‑1 (MQ=255)                                                                                      |                                             TACCGGGTACTGACCGGGCTGGTGGACCGCTTCGGGCGCACACAGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTAC  >  NZ_CP009273/3613167‑3613296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.