| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,794,508 | 0 | T | G | 60.0% | 5.8 / 18.6 | 21 | V62G (GTA→GGA) | nrdI | class Ib ribonucleoside‑diphosphate reductase assembly flavoprotein NrdI |
| Reads supporting (aligned to +/- strand): ref base T (2/6); new base G (12/0); total (15/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.22e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.43e-04 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCTTCGCGGCGTTATTGCTTCTGGTAATCGCAACTTTGGTGAGGCGTATGGCC > NZ_CP009273/2794421‑2794597 | gggAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGGGCCACGACAGGGaa > 2:1037244/1‑90 (MQ=255) aGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAacga < 1:1140937/90‑1 (MQ=255) gACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAacgac < 2:226748/90‑1 (MQ=255) aTCCTGATCGTGCCCTCTTACGGCGGCGGCGGGACGGCTGGCGCGGGGCCACGACAGGGAATTCGCTTTTTAAACGACGAGCACAAcccg > 2:1018998/1‑88 (MQ=255) cTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGGGCGGGGCCCCGACAGGGAATTTCCCTTTTTAACGACGAGCACAACCggggg > 1:733429/1‑88 (MQ=255) cTGATCGTGCCCTCTTACGGCGGCGGCGGGACGGCTGGCGCGGTGCCACGACAGGGAATTCGCTTTTTAAACCACGAGCACAACCCGGCg > 2:1130624/1‑90 (MQ=255) tGATCGTGCCCTCTTACGGCGGCGGCGGGACGGCTGGCGCGGGGCCCCGACAGGGAATTCGCTTTTTTAACGACCAGGACAACCGGGCGt > 1:466288/1‑90 (MQ=255) gATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGGGCCACGACAGGGAATTCGCTTTTTAAACGACGGGCACAACCGGGCggt > 2:982210/1‑88 (MQ=255) aTCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGGAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTg > 2:199653/1‑90 (MQ=255) gTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGGGCCCCCACCGGGAATTTGCTTTTTTAACGACGAGCACAACCCGGCGGTGCtt > 1:421470/1‑90 (MQ=255) gTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGGGCCACGACAGGGAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCtt > 2:1116308/1‑90 (MQ=255) gcggcggcggTACGGCTGGCGCGGGGCCACGACAGGGAATTCGCTTTTTAAACGACGAGCACAACCGGGCGGTGCTTCGCGGCGTTATTg > 2:157878/1‑90 (MQ=255) ggcggcggTACGGCTGGGGCGGGGGCCCGGCAGGGAATTCGCCTTTTTAACGACGGGCACAACCCGGGGGTGGTTCGCGGCGGTAtttgt > 1:689449/1‑87 (MQ=255) ggcggcggTACGGCTGGGGCGGGGGCCCGACAGGGAATTCGCTTTTTTAACGACGAGCACAAACCGGGGGTGCTTCGCGGGGGTATTTCt > 1:494658/1‑90 (MQ=255) ggcggcggTACGGCTGGGGCGGGGCCACGGCAGGAAATTCGCTTTTTAAACGAGCGGGACAACCGGGCGTTTTTTGGCGGAGGTCTTGcg > 2:864628/1‑89 (MQ=255) ggcggcggTACGGCTGGCGCGGGGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTTCTTCGCGGGGTTTTTGCt > 2:1138398/1‑90 (MQ=255) cGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCTTCGCGGCGTTATTGCTTCTGGTAATc < 1:4916/90‑1 (MQ=255) cgcgCTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCTTCGCGGCGTTATTGCTTCTGGTAATCGc < 1:437029/85‑1 (MQ=255) cgcgCTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCTTCGCGGCGTTATTGCTTCTGGTAATCGc > 2:437029/1‑85 (MQ=255) gCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCTTCGCGGCGTTATTGCTTCTGGTAATCGCAACTTTGGTGa < 2:224377/90‑1 (MQ=255) gCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCTTCGCGGCGTTATTGCTTCTGGTAATCGCAACTTTGGTGa < 2:89991/90‑1 (MQ=255) tAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCTTCGCGGCGTTATTGCTTCTGGTAATCGCAACTTTGGTGAGGCGTATGGcc < 2:866452/90‑1 (MQ=255) | GGGAACGGATTCAGGTAGACGAGCCTTACATCCTGATCGTGCCCTCTTACGGCGGCGGCGGTACGGCTGGCGCGGTGCCACGACAGGTAATTCGCTTTTTAAACGACGAGCACAACCGGGCGTTGCTTCGCGGCGTTATTGCTTCTGGTAATCGCAACTTTGGTGAGGCGTATGGCC > NZ_CP009273/2794421‑2794597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |