| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 2707188 | 25 (0.840) | 3 (0.120) | 3/146 | 2.2 | 10.6% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB |
| ? | NZ_CP009273 | = 2707267 | 29 (1.120) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAGGGCAAGCGTAACGAAGCGATCAAGCGTTTGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCGCGCAGTGGCGATACTTATTTGCACCGTATCGGACGTACCGCGC > NZ_CP009273/2707104‑2707275 | cAGGGCAAGCGTAACGAAGCGATCAAGCGTTTGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGAc < 1:288645/90‑1 (MQ=255)cAGGGCAAGCGTAACGAAGCGATCAAGCGTTTGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGAc < 1:572375/90‑1 (MQ=255) gggCAAGCGTAACGAAGCGATCAAGCGTTTGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACAt > 2:677877/1‑90 (MQ=255) ggCAAGCGTAACGAAGCGATCAAGCGTTTGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACAtt > 1:774384/1‑90 (MQ=255) aaGCGTAACGAAGCGATCAAGCGTTTGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCt > 1:236586/1‑90 (MQ=255) aGCGTAACGAAGCGATCAAGCGTTTGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTAcgtccgatacgg > 2:512160‑M1/1‑78 (MQ=255) aaCGAAGCGATCAAGCGTTTGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTc > 2:439277/1‑90 (MQ=255) aaCGAAGCGATCAAGCGTTTGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTc > 1:577094/1‑90 (MQ=255) gCGATCAAGCGTTTGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCAc < 1:439277/90‑1 (MQ=255) gCGATCAAGCGTTTGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCAc > 2:253548/1‑90 (MQ=255) cGTTTGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAAc < 2:236586/90‑1 (MQ=255) gTTTGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACt > 1:414115/1‑90 (MQ=255) tGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTAcgtccgatacggtgcaaataagtatcgccactgcgc > 2:13748‑M1/1‑54 (MQ=255) tGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCg > 2:181464/1‑90 (MQ=255) aaGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGc < 2:488268/90‑1 (MQ=255) aGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGcc > 2:438919/1‑90 (MQ=255) cgTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCGCGCAg < 1:760280/90‑1 (MQ=255) aCTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCGCGCAGTGGCGATAc < 2:547859/90‑1 (MQ=255) aCTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCGCGCAGTGGCGATAc < 2:410868/90‑1 (MQ=255) cTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCgcgc < 1:851206/78‑1 (MQ=255) cTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCgcgc > 2:851206/1‑78 (MQ=255) tGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCGCGCAGTGGCGATACtt > 2:784503/1‑90 (MQ=255) ggTCGCAACCGATGTTGCCGCGCGCGGTAcgtccgatacggtgcaaataagtatcgccactgcgcggcatatcgaagttaaagacgtggc > 2:526337‑M1/1‑29 (MQ=255) tCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCGCGCAGTGGCGATACTTAtt > 2:261913/1‑90 (MQ=255) cAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCGCGCAGTGGCGATACTTATTTGc > 2:257373/1‑90 (MQ=255) aCCGATGTTGCCGCGCGCGGTATCGACATTCCTGAGGTCAGCCACGTCTTTAACTTCGATATGCCGCGCAGTGGCGATACTTATTTGCAc < 2:541015/90‑1 (MQ=255) aCCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCGCGCAGTGGCGATACTTATTTGCAc < 1:257373/90‑1 (MQ=255) ccGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCGCGCAGTGGCGATACTTATTTGCAcc < 2:413853/90‑1 (MQ=255) gcgcgGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCGCGCAGTGGCGATACTTATTTGCACCGTATCGGACGtac < 2:165421‑M2/90‑4 (MQ=255) gcgcgGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCGCGCAGTGGCGATACTTATTTGCACCGTATCGGACGtac < 2:663311‑M2/90‑4 (MQ=255) gcgcgGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCGCGCAGTGGCGATACTTATTTGCACCGTATCGGACGtac < 1:366666‑M2/90‑4 (MQ=255) gcgcgGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCGCGCAGTGGCGATACTTATTTGCACCGTATCGGACGtac < 2:694298‑M2/90‑4 (MQ=255) gTAcgtccgatacggtgcaaataagtatcgccactgcgcggcatatcgaagttaaagacgtggctgacgtcaggaatgtcgataccgcgc < 2:165421‑M1/90‑88 (MQ=255) gTAcgtccgatacggtgcaaataagtatcgccactgcgcggcatatcgaagttaaagacgtggctgacgtcaggaatgtcgataccgcgc < 2:663311‑M1/90‑88 (MQ=255) gTAcgtccgatacggtgcaaataagtatcgccactgcgcggcatatcgaagttaaagacgtggctgacgtcaggaatgtcgataccgcgc < 2:694298‑M1/90‑88 (MQ=255) gTAcgtccgatacggtgcaaataagtatcgccactgcgcggcatatcgaagttaaagacgtggctgacgtcaggaatgtcgataccgcgc < 1:366666‑M1/90‑88 (MQ=255) | CAGGGCAAGCGTAACGAAGCGATCAAGCGTTTGACCGAAGGTCGCGTAAACGTACTGGTCGCAACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTCTTTAACTTCGATATGCCGCGCAGTGGCGATACTTATTTGCACCGTATCGGACGTACCGCGC > NZ_CP009273/2707104‑2707275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |