| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4505647 | 18 (0.600) | 3 (0.100) | 3/162 | 2.4 | 14.5% | coding (848/2325 nt) | fecA | Fe(3+) dicitrate transport protein FecA |
| ? | NZ_CP009273 | 4505651 = | 18 (0.620) | coding (844/2325 nt) | fecA | Fe(3+) dicitrate transport protein FecA | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGGCGCTGTGCTCGCGCCAGTCACTGCCGCGCGTGCCGGAGTAGAGCAGCGCGGTGCCAAAACCGTTGTCCGCTGTGCCGCCCACCATCAGGTTGTGCGTCTCTTTCGGGTTGTTTTGTGAAGAGGTTGGGCTGAGCTGACCTTCCACGCCCGCCTCGATACCAAAGTCCTGC > NZ_CP009273/4505563‑4505736 | gTGGCGCTGTGCTCGCGCCAGTCACTGCCGCGCGTGCCGGAGTAGAGCAGCGCGGTGCCAAAACCGTTGTCCGCTGTGCCGCCCACCATc > 1:743586/1‑90 (MQ=255) tGGCGCTGTGCTCGCGCCAGTCACTGCCGCGCGTGCCGGAGTAGAGCAGCGCGGTGCCAAAACCGTTGTCCGCTGTGCCGCCCACCATCa > 1:520573/1‑90 (MQ=255) cAGTCACTGCCGCGCGTGCCGGAGTAGAGCAGCGCGGTGCCAAAACCGTTGTCCGCTGTGCCGCCCACCATCAGGTTGTGCGTCTCTTTc > 1:728000/1‑90 (MQ=255) aGTCACTGCCGCGCGTGCCGGAGTAGAGCAGCGCGGTGCCAAAACCGTTGTCCGCTGTGCCGCCCACCATCAGGTTGTGCGTCTCTTTCg < 2:673316/90‑1 (MQ=255) cTGCCGCGCGTGCCGGAGTAGAGCAGCGCGGTGCCAAAACCGTTGTCCGCTGTGCCGCCCACCATCAGGTTGTGCGTCTCTTTCGGgttg < 1:291454/90‑1 (MQ=255) gTGCCGGAGTAGAGCAGCGCGGTGCCAAAACCGTTGTCCGCTGTGCCGCCCACCATCAGGTTGTGCGTCTCTTTCGGGTTGTTTTGTGaa < 2:271026/90‑1 (MQ=255) ggAGTAGAGCAGCGCGGTGCCAAAACCGTTGTCCGCTGTGCCGCCCACCATCAGGTTGTGCGTCTCTTTCGGGTTGTTTTGTGAAGAGGt < 1:867484/90‑1 (MQ=255) ggAGTAGAGCAGCGCGGTGCCAAAACCGTTGTCCGCTGTGCCGCCCACCATCAGGTTGTGCGTCTCTTTCGGGTTGTTTTGTGAAGAGGt < 2:633546/90‑1 (MQ=255) agagCAGCGCGGTGCCAAAACCGTTGTCCGCTGTGCCGCCCACCATCAGGTTGTGCGTCTCTTTCGGGTTGTTTTGTGAAGAGGTTGGgc < 1:61653/90‑1 (MQ=255) agagCAGCGCGGTGCCAAAACCGTTGTCCGCTGTGCCGCCCACCATCAGGTTGTGCGTCTCTTTCGGGTTGTTTTGTGAAGAGGTTGGgc < 2:856787/90‑1 (MQ=255) gcgcGGTGCCAAAACCGTTGTCCGCTGTGCCGCCCACCATCAGGTTGTGCGTCTCTTTCGGGTTGTTTTGTGAAGAGGTTGGgctgagct > 2:820347/1‑90 (MQ=255) cgGTGCCAAAACCGTTGTCCGCTGTGCCGCCCCCCATCAGGTTGTGCGTCTCTTTCGGGTTGTTTTGTGAAGAGGTTGGGCTGAGCTGAc < 2:603469/90‑1 (MQ=255) cgGTGCCAAAACCGTTGTCCGCTGTGCCGCCCACCATCAGGTTGTGCGTCTCTTTCGGGTTGTTTTGTGAAGAGGTTGGGCTGAGCTGAc < 2:600693/90‑1 (MQ=255) aaaaCCGTTGTCCGCTGTGCCGCCCACCATCAGGTTGTGCGTCTCTTTCGGGTTGTTTTGTGAAGAGGTTGGGCTGAGCTGACCTTCCAc > 2:334401/1‑90 (MQ=255) ccGTTGTCCGCTGTGCCGCCCACCATCAGGTTGTGCGTCTCTTTCGGGTTGTTTTGTGAAGAGGTTGGGCTGAGCTGACCTTCCAcgccc < 2:156453/90‑1 (MQ=255) cGTTGTCCGCTGTGCCGCCCAtcaggttgtgcgtctctttcgggttgttttgtgaagaggttgggctgagctgac > 1:835655‑M1/1‑21 (MQ=255) cGTTGTCCGCTGTGCCGCCCAtcaggttgtgcgtctctttcgggttgttttgtgaagaggttgggctgagctgac < 2:835655‑M1/75‑55 (MQ=255) cGCTGTGCCGCCCACCATCAGGTTGTGCGTCTTTTTCGGGTTGTTTTGTGAAGAGGTTGGGCTGAGCTGACCTTCCACGCCCGCCTCGAt < 1:359291/90‑1 (MQ=255) cccAtcaggttgtgcgtctctttcgggttgttttgtgaagaggttgggctgagctgaccttccacgcccgcctcgataccaaagtcctgc < 1:135954‑M1/90‑87 (MQ=255) ccAtcaggttgtgcgtctctttcgggttgttttgtgaagaggttgggctgagctgaccttccacgcccgcctcgataccaaagtcctgcg > 2:616246‑M1/1‑3 (MQ=255) caccaTCAGGTTGTGCGTCTCTTTCGGGTTGTTTTGTGAAGAGGTTGGGCTGAGCTGACCTTCCACGCCCGCCTCGATACCAAAGTCCTg < 1:613242/90‑1 (MQ=255) accaTCAGGTTGTGCGTCTCTTTCGGTTTTTTTTGTGAAGGGGTTGGGTTGAGCTGACCTCCCCCGCCCGCCTCGATACCAAAGTCCTGc < 2:288536/90‑1 (MQ=255) | GTGGCGCTGTGCTCGCGCCAGTCACTGCCGCGCGTGCCGGAGTAGAGCAGCGCGGTGCCAAAACCGTTGTCCGCTGTGCCGCCCACCATCAGGTTGTGCGTCTCTTTCGGGTTGTTTTGTGAAGAGGTTGGGCTGAGCTGACCTTCCACGCCCGCCTCGATACCAAAGTCCTGC > NZ_CP009273/4505563‑4505736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |