| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1955597 = | 25 (0.840) | 3 (0.100) | 3/168 | 2.4 | 7.7% | coding (1279/1734 nt) | argS | arginine‑‑tRNA ligase |
| ? | NZ_CP009273 | 1955639 = | 47 (1.570) | coding (1321/1734 nt) | argS | arginine‑‑tRNA ligase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCCAGCCGACGAGCTGGAAAAACTGGCTAACGCGGTTGGTATTGGTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCAGTATGCATACACGCGTGTATTGT > NZ_CP009273/1955553‑1955723 | tGCCAGCCGACGAGCTGGAAAAACTGGCTAACGCGGTTGGTATTGGTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACt > 1:506524/1‑90 (MQ=255) ccAGCCGACGAGCTGGAAAAACTGGCTAACGCGGTTGGTATTGGTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTAc > 1:816091/1‑90 (MQ=255) cAGCCGACGAGCTGGAAAAACTGGCTAACGCGGTTGGTATTGGTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACa < 2:833983/90‑1 (MQ=255) cAGCCGACGAGCTGGAAAAACTGGCTAACGCGGTTGGTATTGGTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACa > 2:720894/1‑90 (MQ=255) ccGACGAGCTGGAAAAACTGGCTAACGCGGTTGGTATTGGTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCt > 1:120035/1‑90 (MQ=255) ccGACGAGCTGGAAAAACTGGCTAACGCGGTTGGTATTGGTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCt > 1:526778/1‑90 (MQ=255) cTGGAAAAACTGGCTAACGCGGTTGGTATTGGTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTgg < 1:156450/90‑1 (MQ=255) tgttgtcccagtcgaagatgtagtcGGTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGacaa > 2:553150‑M1/26‑90 (MQ=255) ttgtcccagtcgaagatgtagtccgtggtgcggtttttggagagatccgcatatttcaccgcaccGACTACATCTTCGACTGGGacaaca > 2:553150‑M2/66‑90 (MQ=255) cTAACGCGGTTGGTATTGGTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTgg > 2:193937/1‑90 (MQ=255) cgGTTGGTATTGGTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTg < 2:609528/90‑1 (MQ=255) cgGTTGGTATTGGTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTg < 1:777714/90‑1 (MQ=255) tGGTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATAc < 2:816091/90‑1 (MQ=255) tGGTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATAc > 1:538553/1‑90 (MQ=255) ggTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTg > 2:723722/1‑79 (MQ=255) ggTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTg < 1:723722/79‑1 (MQ=255) gTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACcg > 2:496781/1‑90 (MQ=255) gTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACcg > 1:829785/1‑90 (MQ=255) gCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACcgcg < 1:496781/90‑1 (MQ=255) gCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACcgcg < 2:560044/90‑1 (MQ=255) gCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACcgcg < 1:747023/90‑1 (MQ=255) tgcggtttttggagagatccgcatatttcaccgcaccGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGcc < 1:553150‑M2/53‑1 (MQ=255) ggTGAAATATGCGGATCTCTCCAAAAACCGCACCACgg > 2:289542/1‑38 (MQ=255) ggTGAAATATGCGGATCTCTCCAAAAACCGCACCACgg < 1:289542/38‑1 (MQ=255) ggTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGacaa > 1:37433/1‑60 (MQ=255) ggTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGacaa < 2:37433/60‑1 (MQ=255) ggTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGcc < 1:560696/90‑1 (MQ=255) ggTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGcc < 2:591870/90‑1 (MQ=255) ggTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGcc < 1:564606/90‑1 (MQ=255) tttggagagatccgcatatttcaccgcaccacgGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATAc < 2:421293‑M2/57‑1 (MQ=255) aaTATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACa < 2:414292/90‑1 (MQ=255) atGCGGATCTCTCCAAAACCCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGc < 2:270381/90‑1 (MQ=255) atGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGc < 1:649241/90‑1 (MQ=255) tGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCa < 2:620209/90‑1 (MQ=255) gCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCAg < 1:7669/90‑1 (MQ=255) gCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCAg < 1:71337/90‑1 (MQ=255) ggATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGGGGGTAATACCGCGCCATACATGCAGTa < 2:453125/90‑1 (MQ=255) ggATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCAGTa < 1:234954/90‑1 (MQ=255) ggATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCAGTa < 2:762772/90‑1 (MQ=255) ggATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCAGTa < 1:95257/90‑1 (MQ=255) ggAGCTCTCCAAGACCCGCACCAAGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCAGTa < 2:774598/90‑1 (MQ=255) tcCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCAGTATGCATac < 2:32507/90‑1 (MQ=255) tcCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCAGTATGCATac < 2:120035/90‑1 (MQ=255) cAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCAGTATGCATacac < 2:787913/90‑1 (MQ=255) cAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCAGTATGCATacac < 2:526869/90‑1 (MQ=255) aaCCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCAGTATGCATACACGCgt > 1:758751/1‑90 (MQ=255) cGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACcgcg > 1:283054/1‑60 (MQ=255) cGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACcgcg < 2:283054/60‑1 (MQ=255) cGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCAGTATGCATACACGCGTGTa > 1:491116/1‑90 (MQ=255) cGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCAGTATGCATACACGCGTGTa > 1:232081/1‑90 (MQ=255) ccacGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACAAGCAGTATGCATACACGCGTGTATTGt < 2:396383/90‑1 (MQ=255) | TGCCAGCCGACGAGCTGGAAAAACTGGCTAACGCGGTTGGTATTGGTGCGGTGAAATATGCGGATCTCTCCAAAAACCGCACCACGGACTACATCTTCGACTGGGACAACATGCTGGCGTTTGAGGGTAATACCGCGCCATACATGCAGTATGCATACACGCGTGTATTGT > NZ_CP009273/1955553‑1955723 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |