| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2006338 = | 21 (0.700) | 3 (0.110) | 3/148 | 2.2 | 14.5% | coding (158/315 nt) | fliE | flagellar hook‑basal body complex protein FliE |
| ? | NZ_CP009273 | 2006392 = | 17 (0.640) | coding (104/315 nt) | fliE | flagellar hook‑basal body complex protein FliE | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACTGGCTGATAACCCCTTCAATCC > NZ_CP009273/2006306‑2006479 | gTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaa < 2:850323/90‑1 (MQ=255) atcactgccgcaaccgaacattagttttgaCGGGCAGCTGTTTGTGTATCACTAATGCCCGCGAGCGCGGCGTGCAGCTGCCCGGCaaaa < 2:1893‑M1/60‑1 (MQ=255) agagTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATg > 1:388223/1‑90 (MQ=255) gcaaccgaccattagttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTc < 2:580322‑M1/69‑1 (MQ=255) gaccattagttttgccgggcagctgcacgccgcgctcgatcgcattagtgatacacaaacagctgcccgGCAAAACTAATGGTCGGTTGc < 2:580322‑M2/21‑1 (MQ=255) ttCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCgg < 2:281103/90‑1 (MQ=255) ttttgccgggcagctgcacgccgcgctcgcgggcattagtgatacacaaacagctgcccgTCAAAACTAATGTTCGGTTGCGGCAGTGAt < 2:1893‑M2/30‑1 (MQ=255) tgcgtgcgGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAt > 2:742642/1‑90 (MQ=255) gcgtgcgGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAtt > 2:148003/1‑90 (MQ=255) ggcagctgcacgccgcgctcgatcgcattagtgatacacaaacagctgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc < 1:561763‑M2/38‑1 (MQ=255) tATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCg > 1:343115/1‑90 (MQ=255) cACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCg < 1:478125/90‑1 (MQ=255) cACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCg > 1:342316/1‑90 (MQ=255) aCTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGt < 1:676752/90‑1 (MQ=255) aCTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGt < 1:56411/90‑1 (MQ=255) aaTGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc < 1:725254/69‑1 (MQ=255) aaTGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 2:725254/1‑69 (MQ=255) aTGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGcc < 1:580322/90‑1 (MQ=255) aTGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGcc < 2:342316/90‑1 (MQ=255) gATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTa > 1:307646/1‑90 (MQ=255) cGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACt < 2:634724/90‑1 (MQ=255) gTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACTGGCTGATAAc < 1:742642/90‑1 (MQ=255) cagctgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACTGGCTGATAAcccc < 1:426047‑M2/80‑1 (MQ=255) cgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACTGGCTGATAACCCCTTCAATcc < 2:386028‑M2/88‑1 (MQ=255) | GTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACTGGCTGATAACCCCTTCAATCC > NZ_CP009273/2006306‑2006479 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |