| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,613,606 | G→C | R77P (CGC→CCC) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,613,606 | 0 | G | C | 100.0% | 55.7 / NA | 16 | R77P (CGC→CCC) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (7/9); total (7/9) | |||||||||||
CTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCG > NZ_CP009273/1613519‑1613686 | ctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATcccc > 2:318077/1‑90 (MQ=255) tCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCCCCTgg < 1:231334/90‑1 (MQ=255) gtgtATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCCCCTGGTCTGTAAAGGCTg < 2:51902/90‑1 (MQ=255) gtgtATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCCCCTGGTCTGTAAAGGCTg < 2:340783/90‑1 (MQ=255) cTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCCCCTGGTCTGTAAAGGCTGGGTGGaaa > 2:295134/1‑90 (MQ=255) ccGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCCCCTGGTCTGTAAAGGCTGGGTGGAAAgg > 2:235766/1‑90 (MQ=255) ggTTGAACTG‑AAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCCCCTGGt < 2:593688/65‑1 (MQ=255) ggTTGAACTG‑AAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCCCCTGGt > 1:593688/1‑65 (MQ=255) tGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCCCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGcc > 1:344009/1‑90 (MQ=255) ttGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCCCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAg > 1:654516/1‑90 (MQ=255) gACCTGGGAGCACTGACCCGTATGCTGGATCCCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTa < 2:229870/90‑1 (MQ=255) gACCTGGGAGCACTGACCCGTATGCTGGATCCCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTa < 1:201979/90‑1 (MQ=255) gAGCACTGACCCGTATGCTGGATCCCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTaa < 1:299901/90‑1 (MQ=255) gAGCACTGACCCGTATGCTGGATCCCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTaa < 1:295134/90‑1 (MQ=255) aCTGACCCGTATGCTGGATCCCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACt > 1:125955/1‑90 (MQ=255) gACCCGTATGCTGGATCCCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTac > 1:246440/1‑90 (MQ=255) tGCTGGATCCCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACcggcg < 2:321519/90‑1 (MQ=255) | CTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCG > NZ_CP009273/1613519‑1613686 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |