Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1206656	1206676	21	3 [1]	[1] 3	mcrA/BW25113_RS23640	5‑methylcytosine‑specific endonuclease McrA/isocitrate/isopropylmalate family dehydrogenase

GCACTATAGTAAAAATGCAAAAGAACTAATCGAGATGCTTTACGTTAATATAAACCGATTACAGAAATAAAATTATTTATTAAAGTCACATTTAAGACGT  >  NZ_CP009273/1206566‑1206665                                                                                          |           gCACTATAGTAAAAATGCAAAAGAACTAATCGAGATGCTTTACGTTAATATAAACCGATTACAGAAATAAAATTATTTATTAAAGTcaca            >  1:526094/1‑90 (MQ=255) gCACTATAGTAAAAATGCAAAAGAACTAATCGAGATGCTTTACGTTAATATAAACCGATTACAGAAATAAAATTATTTATTAAAGTcaca            >  1:706770/1‑90 (MQ=255)           aaaaaTGCAAAAGAACTAATCGAGATGCTTTACGTTAATATAAACCGATTACAGAAATAAAATTATTTATTAAAGTCACATTTAAGACGt  <  1:67484/90‑1 (MQ=255)                                                                                          |           GCACTATAGTAAAAATGCAAAAGAACTAATCGAGATGCTTTACGTTAATATAAACCGATTACAGAAATAAAATTATTTATTAAAGTCACATTTAAGACGT  >  NZ_CP009273/1206566‑1206665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑