| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,380,342 | 0 | C | A | 54.5% | 4.9 / 13.9 | 12 | intergenic (+32/‑71) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| Reads supporting (aligned to +/- strand): ref base C (1/4); new base A (6/0); total (8/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.52e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.05e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACATGCACATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTAT > NZ_CP009273/2380265‑2380430 | tCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACATGCACatt < 1:691307/90‑1 (MQ=255) ggTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAAAGACATGCACATTTTTTTTTTCCTCa > 1:262621/1‑90 (MQ=255) ggTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGCCA‑GAAAAAAAGACATGCACAATTTTTTTTTCCTCa > 1:195580/1‑90 (MQ=255) tgtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACATGCACATTTTATTTTCCCTCATc < 2:289567/90‑1 (MQ=255) ataACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGCCA‑GAAAAAACGACAAGCACATTTTTTTTTTCCTCATCtttt > 1:46468/1‑90 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAAAGACATGCACATTTTTTTTTTCCTCCTCTGtttttaa > 1:191568/1‑87 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGGCACGAAAAAG‑GACAATGAAATTTTTTTTTTTCCCATCTTTTTTata > 1:756769/1‑88 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGGCA‑GAAAAAAAGACAAGCACATTTTTTTTTTTCTCCTCtttttttaa > 1:351049/1‑87 (MQ=255) acaGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACATGCACATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACAt < 2:46468/90‑1 (MQ=255) acaGTAAATAATAAAAATTTCTCGAGGCGGGGCCA‑GAAAAAAAGACAAGCACATTTTTTTTTTCCTCCTCTTTTTTTAAAAGCGaaaaaa > 1:580936/1‑87 (MQ=255) ataaAAATTTCTCGAGGCGGGGCCC‑GAAAAAAAGACAAGCACATTTTTTTTTTTCTCCTCTTTTTTTTAATAGGAAAAATGAAATTTaaa > 2:791421/1‑89 (MQ=255) gCGACATGCACATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTAt < 1:48647/90‑1 (MQ=255) | TCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGTCCA‑GAAAAAGCGACATGCACATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTAT > NZ_CP009273/2380265‑2380430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |