| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,703,332 | 0 | A | C | 53.8% | 9.8 / 15.5 | 14 | G168G (GGT→GGG) | eptB | kdo(2)‑lipid A phosphoethanolamine 7''‑transferase |
| Reads supporting (aligned to +/- strand): ref base A (6/0); new base C (0/7); total (6/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.83e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.56e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCCATAACTCGGCAAATCAACGCCGGTCGCCCTCTCCACTTTCTTCTGCTGGATATCCAGCAAACGAATCGGTGCCCAAACC‑ATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCAGTTGTCGGAGCAAGGTGTAGCGACAGCGGTT > NZ_CP009273/3703245‑3703415 | gCCATAACTCGGCAAATCAACGCCGGTCGCCCTCTCCACTTTCTTCTGCTGGATATCCAGCAAACGAATCGGTGCCCAAACC‑ATAATAcc > 2:577958/1‑90 (MQ=255) aaCTCGGCAAATCAGCGCCGGTCGCCCTCTCCACTTTCTTCTGCTGGATATCCAGCAAACGAATCGGTGCCCAAACC‑ATAATACCCGCCa > 1:331631/1‑90 (MQ=255) gCAAATCAACGCCGGTCGCCCTCTCCACTTTCTTCTGCTGGATATCCAGCAAACGAATCGGTGCCCAAACC‑ATAATACCCGCCAGTacga > 1:647336/1‑90 (MQ=255) ggTCGCCCTCTCCACTTTCTTCTGCTGGATATCCAGCAAACGAATCGGTGCCCAAACC‑ATAATACCCGCCAGTACGACGACCGCCAGGCt > 2:409267/1‑90 (MQ=255) ccctcTTTCTTCGGCGGTATACCAAGCAAAGCAAT‑GGGACCCAAACCAATAATGCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGc < 1:796218/86‑1 (MQ=255) cccccTTTCTTCTGCGGGATACCCAACAAACGAATCGGTCCCAAAACA‑ATAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGc < 1:170471/86‑1 (MQ=255) ttctGCTGGATATCCAGCAAACGAATCGGTGCCCAAACC‑ATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTggg > 2:24830/1‑90 (MQ=255) tgctgAATACCCAAAAAACAAACCGGTCCCCAACCC‑ATAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGtt < 1:202029/90‑1 (MQ=255) ccAGAAAACGAATGGGTCCCAAACCC‑AAAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCAGTTGTc < 1:17462/90‑1 (MQ=255) aaCAAATCGGTCCCAAAACA‑AAAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCAGTTGTCGGAGCa < 1:323024/90‑1 (MQ=255) cGAAGCGGTCCCAAAACA‑AAAATCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCAGTTGTCGGAGCAAg < 1:140531/90‑1 (MQ=255) ccAAACCAATAACCCCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCAGTTGTCGGAGCAAGGTGTAGCGAc < 1:17901/90‑1 (MQ=255) caaaaCA‑ATAATCCCCGCCAGTACGATGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCAGTTGTCGGAGCAAGGTGTAGCGACa < 1:470743/88‑1 (MQ=255) c‑ATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCAGTTGTCGGAGCAAGGTGTAGCGACAGCGGtt > 2:350540/1‑90 (MQ=255) | GCCATAACTCGGCAAATCAACGCCGGTCGCCCTCTCCACTTTCTTCTGCTGGATATCCAGCAAACGAATCGGTGCCCAAACC‑ATAATACCCGCCAGTACGACGACCGCCAGGCTGCGAATACGCTGCCCTGGGGTTCGCAGTTGTCGGAGCAAGGTGTAGCGACAGCGGTT > NZ_CP009273/3703245‑3703415 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |