| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,390,883 | Δ1 bp | coding (272/1470 nt) | rng ← | ribonuclease G |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,390,883 | 0 | C | . | 90.9% | 35.5 / ‑3.2 | 11 | coding (272/1470 nt) | rng | ribonuclease G |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base . (7/3); minor base G (0/1); total (7/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
GCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCG > NZ_CP009273/3390805‑3390960 | gcACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCG‑GCACCGTGAAtt > 2:604461/1‑90 (MQ=255) ggttCTTTCCCCCCCTGCACCATCAGATCTGGCCCCTGACGACCCAGTCCCGAGATGT‑GGGCGCCGTGAATTGCTTTTTTTCTCCCCCCg < 2:286493/87‑1 (MQ=255) gCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCG‑GCACCGTGAATTGCttt > 1:594005/1‑61 (MQ=255) gCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCG‑GCACCGTGAATTGCttt < 2:594005/61‑1 (MQ=255) gCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCG‑GCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGtgtg > 2:593101/1‑90 (MQ=255) ccccATAAGTTTTTCCCCCTGCCGACCCAGTCCCGAGATGGCG‑GCCCGGTAATTTGTTTTTTTTCTTCCCCCGCCACACATTCGGTGTGc < 1:109612/88‑1 (MQ=255) tGCCCCTGACGAACCAGTTCCGAGATGTCG‑GCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCgg > 2:216182/1‑90 (MQ=255) cTGACGAACCAGTTCCGAGATGTCG‑GCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCa > 1:444298/1‑90 (MQ=255) cTGACGAACCAGTTCCGAGATGTCG‑GCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCa > 1:486103/1‑90 (MQ=255) gTTCCGAGTTGTCG‑GCCCCGTAATTTTTTTTTTTTCTTCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAAcgc < 2:27988/90‑1 (MQ=255) ttCCGAGATGTCG‑GCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAAcgcg > 1:274744/1‑90 (MQ=255) | GCACCTTTAGTGCCAAGCGGATCTTTCACCACCTGCACCATCAGATCTTGCCCCTGACGAACCAGTTCCGAGATGTCGCGCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCG > NZ_CP009273/3390805‑3390960 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |