| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 255699 | 1 (0.050) | 28 (1.280) | 19/170 | 0.2 | 96.5% | coding (113/1056 nt) | phoE | phosphoporin PhoE |
| ? | NZ_CP009273 | 269666 = | NA (NA) | intergenic (+2/+146) | ykfC/BW25113_RS01325 | reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase | |||||
TTTGTGTTTCGCCTTTGAAACCAAAACGGATATAACTCTGGTCGCCATCTTTACTGGCGTTATCACTCATATAATGCATGGCTTTAACTTTGCCATAGACATCCAGTTTATTACCGTCTTTATTATATATTTCTGCAGCCTGTACAGATGCAGATGCCACAATGCCCATCACCACT > NZ_CP009273/255613‑255788 | tttGTGTTTCGCCTTTGAAACCAAAACGGATATAACTCTGGTCGCCATCTTTACTGGCGTTATCACTCATATAATGCATGGCTTTAAgga < 1:12366‑M1/90‑4 (MQ=255) tttCGCCTTTGAAACCAAAACGGATATAACTCTGGTCGCCATCTTTACTGGCGTTATCACTCATATAATGCATGGCTTTAAggaaggtgc < 2:363898‑M1/90‑10 (MQ=255) aaaCGGATATAACTCTGGTCGCCATCTTTACTGGCGTTATCACTCATATAATGCATGGCTTTAAggaaggtgcgaataagcggggaaatt > 2:54628‑M1/1‑64 (MQ=255) tctGGTCGCCATCTTTACTGGCGTTATCACTCATATAATGCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggttgac < 1:513115‑M1/90‑40 (MQ=255) tGGTCGCCATCTTTACTGGCGTTATCACTCATATAATGCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactc > 1:195995‑M1/1‑49 (MQ=255) ggTCGCCATCTTTACTGGCGTTATCACTCATATAATGCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactca > 2:235997‑M1/1‑48 (MQ=255) cTTTACTGGCGTTATCACTCATATAATGCATGGCTTTAACTTTGCCATAGACATCCAGTTTATTACCGTCTTTATTATATATTTCTGCAg < 2:278907/90‑1 (MQ=255) ttACTGGCGTTATCACTCATATAATGCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 2:517308‑M1/90‑54 (MQ=255) ggCGTTATCACTCATATAATGCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc > 1:244‑M1/1‑32 (MQ=255) gTTATCACTCATATAATGCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 2:28595‑M1/1‑29 (MQ=255) tATCACTCATATAATGCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtt > 1:541320‑M1/1‑27 (MQ=255) tCATATAATGCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagcc > 2:462895‑M1/1‑21 (MQ=255) cATATAATGCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccg > 1:328743‑M1/1‑20 (MQ=255) tataATGCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgat > 2:135155‑M1/1‑18 (MQ=255) aTGCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgcctcagtcatttcatttcttcgtgtttgagccggttttt > 1:551141‑M1/1‑14 (MQ=255) gCATGGCTTTAAggaaggtgcgaataagcgggggaagtcttcgcggctgactcagtcatttcatttcttcatgtgtgagccggttttttc > 1:388296‑M1/1‑12 (MQ=255) gCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc > 2:18385‑M1/1‑12 (MQ=255) gCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc > 1:324981‑M1/1‑12 (MQ=255) gCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc > 1:271637‑M1/1‑12 (MQ=255) gCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc > 1:263698‑M1/1‑12 (MQ=255) gCATGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc > 1:262660‑M1/1‑12 (MQ=255) aTGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctc < 2:36233‑M1/90‑81 (MQ=255) aTGGCTTTAAggaaggtgcgaataagcggggaaattcttctcggcggactcagtcatttcatttcttcatgtttgagccgattttttctc > 2:471269‑M1/1‑10 (MQ=255) cTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatttttgagccgattttttctcccgt > 1:59180‑M1/1‑6 (MQ=255) cTTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgt < 2:57729‑M1/90‑85 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 2:303583‑M1/90‑89 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 1:181201‑M1/90‑89 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg > 2:92717‑M1/1‑1 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg > 1:129363‑M1/1‑1 (MQ=255) | TTTGTGTTTCGCCTTTGAAACCAAAACGGATATAACTCTGGTCGCCATCTTTACTGGCGTTATCACTCATATAATGCATGGCTTTAACTTTGCCATAGACATCCAGTTTATTACCGTCTTTATTATATATTTCTGCAGCCTGTACAGATGCAGATGCCACAATGCCCATCACCACT > NZ_CP009273/255613‑255788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |