| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 42 (1.920) | 23/170 | 0.1 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
CTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360020‑360193 | cTTGCCAGCGGCTTACCATCCAGCGCCCCCATCCAGTGCAGGAGCCCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTcc > 1:12904/1‑90 (MQ=255) tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 2:216061/1‑90 (MQ=255) tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGGGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 1:159716/1‑90 (MQ=255) gCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa > 1:338649/1‑90 (MQ=255) cTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTAt < 1:138930/90‑1 (MQ=255) aGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcggggggg > 2:246266/1‑86 (MQ=255) gcCCCCATCCAGTGCAGGGGCTCCGATGCTAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTg < 2:109966/90‑1 (MQ=39) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGcccg > 2:510117/1‑88 (MQ=255) ccccaTCCAGTGCGGGAGCCCCGATGATAAGCTGTCAAACATGAGAATTCCGACCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑cc < 2:178896/88‑1 (MQ=38) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGc < 1:344183/90‑1 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCAc < 2:338649/90‑1 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTcc < 1:518487/90‑1 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGACCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTcc < 1:12623/90‑1 (MQ=255) aGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCCG‑Ccccccccccccccc > 1:12536/1‑88 (MQ=38) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCCG‑CCCCCCCCCCCCCcgg > 2:218907/1‑90 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCTG‑CCCCCCCCCCCCCcgg > 2:294559/1‑90 (MQ=38) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGACCTG‑Ccccccccccccctcg > 2:210226/1‑87 (MQ=38) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGt < 2:54311/90‑1 (MQ=255) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGt < 2:445448/90‑1 (MQ=255) atAAGCTGTCAAACATGGAAGTTCCGATCCCCAATTCCGGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGc < 1:155470/90‑1 (MQ=21) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCaa < 2:344340/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCaa < 2:158856/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCaa < 1:246266/90‑1 (MQ=255) gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTc < 1:113791/90‑1 (MQ=255) gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTc < 1:205038/90‑1 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTc < 1:333653/90‑1 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTc < 2:605638/90‑1 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTc < 2:25417/90‑1 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc < 1:326647/90‑1 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc < 2:103603/90‑1 (MQ=255) tCCGACCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc < 1:139178/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 2:359861/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 2:371912/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 2:488036/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCCG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:387606/90‑1 (MQ=255) cccccAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 2:6621/89‑1 (MQ=255) aattaaTTCCTGGCAGTTTATGGCGGGGGGCCCGCCCCCCCCCCCCCCGGGCGGTTTTTTCCAAACTTTAAAATCCCCCCCCGCCGGttt > 2:158840/5‑90 (MQ=2) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:216061/90‑1 (MQ=25) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:432688/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:163355/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:510117/90‑1 (MQ=35) | CTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360020‑360193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |