New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	360168 =	NA (NA)	8 (0.410)	5/152	1.2	NA	intergenic (‑99/+187)	lacZ/BW25113_RS23320	beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
	?	NZ_CP009273	360191 =	NA (NA)					intergenic (‑122/+164)	lacZ/BW25113_RS23320	beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein

GTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA  >  NZ_CP009273/360079‑360195                                                                                           |                            gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTc                             <  1:205038/90‑1 (MQ=255) gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTc                             <  1:113791/90‑1 (MQ=255)           agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTc                   <  1:333653/90‑1 (MQ=255)           agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTc                   <  2:605638/90‑1 (MQ=255)           agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTc                   <  2:25417/90‑1 (MQ=255)                tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc              <  1:326647/90‑1 (MQ=255)                tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc              <  2:103603/90‑1 (MQ=255)                tCCGACCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc              <  1:139178/90‑1 (MQ=255)                     tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt         <  2:488036/90‑1 (MQ=255)                     tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt         <  2:371912/90‑1 (MQ=255)                     tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt         <  2:359861/90‑1 (MQ=255)                     tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCCG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt         <  1:387606/90‑1 (MQ=255)                     cccccAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt         <  2:6621/89‑1 (MQ=255)                      aattaaTTCCTGGCAGTTTATGGCGGGGGGCCCGCCCCCCCCCCCCCCGGGCGGTTTTTTCCAAACTTTAAAATCCCCCCCCGCCGGttt         >  2:158840/5‑90 (MQ=2)                          aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc    <  1:216061/90‑1 (MQ=25)                          aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc    <  2:163355/90‑1 (MQ=35)                          aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc    <  2:432688/90‑1 (MQ=35)                          aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc    <  1:510117/90‑1 (MQ=35)                            ttCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTa  <  2:385481/90‑1 (MQ=32)                            ttCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTa  <  2:147936/90‑1 (MQ=32)                                                                                           |                            GTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA  >  NZ_CP009273/360079‑360195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.