| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3022788 = | 10 (0.460) | 3 (0.150) | 3/156 | 1.6 | 23.8% | coding (1503/1920 nt) | ygfT | formate‑dependent uric acid utilization protein YgfT |
| ? | NZ_CP009273 | 3022819 = | 10 (0.500) | coding (1472/1920 nt) | ygfT | formate‑dependent uric acid utilization protein YgfT | |||||
GTACGAATCAGGCCCACCGCAGTTAAACGCCCATCTTCGTCACAAGCGATATATTGCGGTTGAACATTGAACTGAAACTCGACACCTTCCTCGCGCGCATTAACCACCTCTTTGCGCGAGCCCGGCATACTGACTTCATCACGACGATACGCGCAGGTCACGCTGGCGGCATTGA > NZ_CP009273/3022699‑3022873 | acgacaatggattgtttgcggacttccatccgcctcaatgccgccagcgtgacctgcgcgtatcgtcgtgatgaagtcagtatgccgggc > 1:296887‑M1/90‑90 (MQ=255) tACGAATCAGGCCCACCGCAGTTAAACGCCCATCTTCGTCACAAGCGTTATATTGCGGTTGAACATTGAACTGAACCTCGACACCTTCCt < 1:239430/90‑1 (MQ=255) acaatggattgtttgcggacttccatccgcctcaatgccgccagcgtgacctgcgcgtatcgtcgtgatggagtcagtatgccgggCTcg > 1:231613‑M1/87‑90 (MQ=255) cccATCTTCGTCACAAGCGATATATTGCGGTTGAACATTGAACTGAAACTCGACACCTTCCTCGCGCGCATTAACCACCTCTTTGCGCGa > 1:194166/1‑90 (MQ=255) cgcctcaatgccgccagcgtgacctgcgcgtatcgtcgtgatgaagtcagtatgccgggCCCGCGCGCATTAACCACCTCTTTGCGCGAg < 1:375413‑M1/31‑1 (MQ=255) cATCTTCGTCACAAGCGATATATTGCGGTTGAACATTGAACTGAAACTCGACACCTTCCTCGCGCGCATTAACCACCTCTTTGCGCGAGc > 2:17143/1‑90 (MQ=255) gCGATATATTGCGGTTGAACATTGAACTGAAACTCGACACCTTCCTCGCGCGCATTAACCACCTCTTTGCGCGAGCCCGGCATACTGACt < 2:194166/90‑1 (MQ=255) gCGATATATTGCGGTTGAACATTGAACTGAAACTCGACACCTTCCTCGCGCGCATTAACCACCTCTTTGCGCGAGCCCGGCATACTGACt < 2:73345/90‑1 (MQ=255) cGGTTGAACATTGAACTGAAACTCGACACCTTCCTCGCGCGCATTAACCACCTCTTTGCGCGAGCCCGGCATACTGACTTCATCacgacg > 1:210683/1‑90 (MQ=255) tatcgtcgtgatgaagtcagtatgccgggCTCGCGCGCATTAACCACCTCTTTGCGAGAGCCCGGCATACTGACTTCATCACGACGATAc < 2:332508‑M1/61‑1 (MQ=255) tGAACATTGAACTGAAACTCGACACCTTCCTCGCGCGCATTAACCACCTCTTTGCGCGAGCCCGGCATACTGACTTCATCACGACGATAc > 2:435839/1‑90 (MQ=255) tcgtcgtgatgaagtcagtatgccgggCTCGCGCGCATTAACCACCTCTTTGCGCGAGCCCGGCATACTGACTTCATCACGACGATAcgc < 1:241563‑M1/63‑1 (MQ=255) cATTGACCTGAAACTCGACACCTTCCTCGCGCGCATTAACCTCCTCTTTGCGCGAGCCCGGCATACTGACTTCATCACGACGATACgcgc < 1:600485/90‑1 (MQ=255) gAAACTCGACACCTTCCTCGCGCGCATTAACCACCTCTTTGCGCGAGCCCGGCATACTGACTTCATCACGACGATACGCGCAGGTCACGc > 2:407648/1‑90 (MQ=255) cTTCCTCGCGCGCATTAACCACCTCTTTGCGCGAGCCCGGCATACTGACTTCATCACGACGATACGCGCAGGTCACGCTGGCGGCATTGa < 1:573659/90‑1 (MQ=255) | GTACGAATCAGGCCCACCGCAGTTAAACGCCCATCTTCGTCACAAGCGATATATTGCGGTTGAACATTGAACTGAAACTCGACACCTTCCTCGCGCGCATTAACCACCTCTTTGCGCGAGCCCGGCATACTGACTTCATCACGACGATACGCGCAGGTCACGCTGGCGGCATTGA > NZ_CP009273/3022699‑3022873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |