| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3574719 = | 29 (1.330) | 4 (0.200) | 4/156 | 1.4 | 12.6% | coding (222/489 nt) | yhhY | N‑acetyltransferase |
| ? | NZ_CP009273 | 3574782 = | 29 (1.450) | coding (285/489 nt) | yhhY | N‑acetyltransferase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCGCCGATCGTCCCGGCATCAAGCAACTCGTCGCCTGTATTGATGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAG > NZ_CP009273/3574631‑3574803 | gttatcgacaaacacggttagttcaatgcgatctacccgcaaccagttgtcgcacatttcaatcatctctcgcatcagggcgctggcgAc < 2:543935‑M1/2‑1 (MQ=255) atcgacaaacacggttagttcaatgcgatctacccgcaaccagttgtcgcacatttcaatcatctctcgcatcagggcgctggcgAcgcc > 2:357797‑M1/86‑90 (MQ=255) gATCGTCCCGGCATCAAGCAACTCGTCGCCTGTATTGATGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCAcgccgc < 2:567166/90‑1 (MQ=255) aaGCAACTCGTCGCCTGTATTGATGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGAt > 2:212446/1‑90 (MQ=255) tcaatgcgatctacccgcaaccagttgtcgcacatttcaatcatctctcgcatcagggcgctggcgACGCCGCAGTCATGTTGCCGAttt < 1:329817‑M1/24‑1 (MQ=255) aaCTCGTCGCCTGTATTGATGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATATTGCCGATTTTg < 2:605967/90‑1 (MQ=255) aCTCGTCGCCTGTATTGATGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTgg > 1:138807/1‑90 (MQ=255) tGATGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGActc < 2:138807/90‑1 (MQ=255) tGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCg < 1:604222/90‑1 (MQ=255) agaCGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTgtgt < 2:537607/78‑1 (MQ=255) agaCGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTgtgt > 1:537607/1‑78 (MQ=255) agaCGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTg > 2:488764/1‑90 (MQ=255) tcgtGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGgaaga > 1:403717/1‑90 (MQ=255) tcgtGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGgaaga > 1:345619/1‑90 (MQ=255) cgtGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGgaagaa > 2:411015/1‑90 (MQ=255) gggCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACcg > 2:348120/1‑90 (MQ=255) aTCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGTACCgcggcg > 1:501816/1‑90 (MQ=255) aTCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCgcggcg > 1:353438/1‑90 (MQ=255) aTCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCgcggcg > 2:504679/1‑90 (MQ=255) aTCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCgcggcg > 1:364343/1‑90 (MQ=255) tctcACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGt > 2:182587/1‑90 (MQ=255) ctcACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTc < 1:201714/90‑1 (MQ=255) ccATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCa > 2:398782/1‑90 (MQ=255) cATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAg < 1:615915/90‑1 (MQ=255) ctcgcatcagggcgctggcgACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAgc < 1:44455‑M1/70‑1 (MQ=255) ttGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAgcg > 2:29277/1‑90 (MQ=255) tcgcatcagggcgctggcgACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAgcg < 2:156546‑M1/71‑1 (MQ=255) gACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAGCGcc > 2:259450/1‑90 (MQ=255) gACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAGCGcc > 1:282967/1‑90 (MQ=255) gCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAGCGCCCTGAt > 2:219199/1‑90 (MQ=255) aGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCgag > 1:412329/1‑90 (MQ=255) aGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCgag < 1:102601/90‑1 (MQ=255) ctggcgACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCgaga < 2:124527‑M1/84‑1 (MQ=255) cgcCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCgagag < 1:437724/90‑1 (MQ=255) cgcCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAGCGCCCCGATGCgagag < 1:418204/90‑1 (MQ=255) | TCGCCGATCGTCCCGGCATCAAGCAACTCGTCGCCTGTATTGATGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAG > NZ_CP009273/3574631‑3574803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |