| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3693271 | 23 (1.050) | 3 (0.150) | 3/152 | 1.6 | 12.3% | intergenic (+18/+69) | bcsG/ldrD | cellulose biosynthesis protein BcsG/type I toxin‑antitoxin system toxic polypeptide LdrD |
| ? | NZ_CP009273 | = 3693281 | 22 (1.130) | intergenic (+28/+59) | bcsG/ldrD | cellulose biosynthesis protein BcsG/type I toxin‑antitoxin system toxic polypeptide LdrD | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCA > NZ_CP009273/3693192‑3693360 | aaTACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTccccc > 2:90176/1‑90 (MQ=255) tACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCct < 1:113432‑M2/90‑3 (MQ=255) ccAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgc > 2:375787‑M2/1‑86 (MQ=255) aGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTcccc < 2:121994/83‑1 (MQ=255) aGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTcccc > 1:121994/1‑83 (MQ=255) aGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg < 2:560238‑M2/90‑7 (MQ=255) aGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg < 2:534698‑M2/90‑7 (MQ=255) aGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg < 1:556196‑M2/90‑7 (MQ=255) aTAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGGGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcct < 1:450978‑M2/90‑10 (MQ=255) aaaCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTgg > 1:380722/1‑90 (MQ=255) aaaCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTgg > 2:528004/1‑90 (MQ=255) aaaCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTgg > 2:270221/1‑90 (MQ=255) aaaCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTgg > 2:155456/1‑90 (MQ=255) aaaCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTgg > 2:127946/1‑90 (MQ=255) aaCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt > 2:513382/1‑90 (MQ=255) ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttc > 2:473480‑M2/1‑76 (MQ=255) gTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctg > 2:597660‑M2/1‑74 (MQ=255) gTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctg < 1:597660‑M2/77‑4 (MQ=255) aCGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGgc > 2:134780/1‑90 (MQ=255) aCGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGgc > 2:102444/1‑90 (MQ=255) gTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGgcgc < 2:35207/90‑1 (MQ=255) tCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGggggggaactctgcggcctttttcgttctttc > 2:156034‑M1/1‑58 (MQ=255) cGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCaaa < 1:270221/90‑1 (MQ=255) cGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCaaa < 2:512004/90‑1 (MQ=255) aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgttcttactgcgggta > 1:472904‑M2/1‑60 (MQ=255) ggcgACTGGGTGCCTTCCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCCGGTCCGGGCGCAAATTGCCATTACgg < 1:281973/90‑1 (MQ=255) tACCCGCAGTAAGAACGAAAAAGGCCGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgt > 1:472904‑M1/1‑30 (MQ=255) tACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc < 1:514545/90‑1 (MQ=255) gCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac < 1:8223/90‑1 (MQ=255) gCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac < 1:79826/90‑1 (MQ=255) gaaagaACGAAAAAGGCCGCAGAGTTCCCCCCctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggcga > 2:156034‑M2/3‑32 (MQ=255) aGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTa > 2:131783/1‑90 (MQ=255) gAAAAAGGCCGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggcgaacgtacgg > 2:473480‑M1/1‑14 (MQ=255) gAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc > 2:541861/1‑90 (MQ=255) aGGCCGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcccccagtcgccgccgttcaggcgaacgtacggtttat < 1:450978‑M1/90‑82 (MQ=255) ggCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGt > 2:579640/1‑90 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggcgaacgtacggtttatcct < 1:556196‑M1/90‑85 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggcgaacgtacggtttatcct < 2:534698‑M1/90‑85 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggcgaacgtacggtttatcct < 2:560238‑M1/90‑85 (MQ=255) gCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggcgaacgtacggtttatcctgg > 2:375787‑M1/1‑4 (MQ=255) cAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggcgaacgtac < 1:597660‑M1/77‑75 (MQ=255) cAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggcgaacgtac > 2:597660‑M1/1‑3 (MQ=255) agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGcc < 2:96329/90‑1 (MQ=255) aGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggcgaacgtacggtttatcctggta < 1:113432‑M1/90‑89 (MQ=255) gagCTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCa > 1:194118/1‑90 (MQ=255) | AATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCGCTTGTTCAGCCA > NZ_CP009273/3693192‑3693360 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |