New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	376748 =	NA (NA)	4 (0.200)	4/152	1.4	NA	intergenic (‑5/‑59)	BW25113_RS01855/BW25113_RS01870	transferase/IS3‑like element IS2 family transposase
	?	NZ_CP009273	376768 =	NA (NA)					intergenic (‑25/‑39)	BW25113_RS01855/BW25113_RS01870	transferase/IS3‑like element IS2 family transposase

CTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGA  >  NZ_CP009273/376679‑376802                                                                                          |                                   cTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg                                    <  1:330325/90‑1 (MQ=255)     ttattGTGCCAGGACGAATAAACGCATAATTACTGGACTTGCCCCCTGAATCTCCAGACAACCAAAAACACTTAAATAAGTGATAGTCtt                                >  1:317633/1‑90 (MQ=21)          gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAc                           >  1:151730/1‑90 (MQ=255)               aGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGtt                      >  1:394082/1‑90 (MQ=255)                    gAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                 >  1:415938/1‑90 (MQ=255)                          aCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGt           >  2:217087/1‑90 (MQ=255)                                aaTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTgg     <  2:1963/90‑1 (MQ=35)                                   tACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgaga  <  2:373561/90‑1 (MQ=31)                                                                                          |                                   CTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGA  >  NZ_CP009273/376679‑376802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.