| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 536,016 | 0 | T | G | 58.3% | 7.2 / 11.0 | 12 | intergenic (+52/‑5) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| Reads supporting (aligned to +/- strand): ref base T (1/4); new base G (7/0); total (8/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.01e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.93e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTT > NZ_CP009273/535942‑536104 | ttATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAAttt < 1:189771/90‑1 (MQ=255) tCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCCGTTAAGGGGGGTTTATTTTCCATTTTTCAGGCAGCcgc > 1:197731/1‑90 (MQ=255) tAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGcc < 1:250733/90‑1 (MQ=255) aaTCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTTTCCGGGTAAGGGGGGGTTTTGTTCAATTTTTCCGGCAGCCGCGGAAGCCt > 2:250733/1‑90 (MQ=255) ggCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGGTTAGGGGGGTTTTTGTTTAATTTTTCAGTCAGCCGCGAAAGCCTGtttt > 2:248771/1‑88 (MQ=255) cTGCAATGCCCGTCCTTGCGGCGGGGATTCTCCGGGTAAGGGGGGTTTTTTTTTTATTTTTTAGTGAGCCCCGGAAACCTGTTTTCAggg > 1:356255/1‑89 (MQ=255) cTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCCGTTTAGGGGGGTTTTTGTTTAATTTTTTAGTCAGCCGCGGAAACCCGTTTTTAggg > 1:593217/1‑89 (MQ=255) gCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGt < 1:297975/90‑1 (MQ=255) cGTCCTTGCGGCGGGCATTATTCGGTTAAGGGGGGTTTTTGTTTAATTTTTCAGTCGGCCGGGGAAGCCTGTTTTCCGGGTTTTTGTGGt > 1:565428/1‑90 (MQ=255) gcggcgGGCATTCTCCGGTTAAGGGGGGTTTATGTTTAATTTTTCAGGCAGCCGCGAAAGCCTGTTATCAGGATTTTAGTGGGTtttttt > 2:297975/1‑90 (MQ=255) cGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAacac < 1:88114/90‑1 (MQ=255) aGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTtgt > 2:239426/1‑90 (MQ=255) gtgtTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGtt < 2:565428/90‑1 (MQ=255) | TTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTT > NZ_CP009273/535942‑536104 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |