| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 886,487 | 0 | C | T | 53.8% | 1.0 / 12.9 | 13 | S40F (TCT→TTT) | ybjC | DUF1418 family protein |
| Reads supporting (aligned to +/- strand): ref base C (0/6); new base T (7/0); total (7/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.83e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.13e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATACTGGAATTTATCGGAATGATGCTACTGGCGGTGGCGCTGCTGTCGGTAAGCGACTCCCTGTCGCTGCCTGAGCCATTTTCTCGGCCAGAAGTGCAGATTCTGATGATTTTTCTCGGTGTTTTGCTCATGCTTCCCGCTGCGGTGGTGGTTATTCTTCAGG > NZ_CP009273/886404‑886567 | gATACTGGAATTTATCGGAATGATGCTACTGGCGGTGGCGCTGCTGTCGGTAAGCGACTCCCTGTCGCTGCCTGAGCCATTTTCTCGGcc < 1:61364/90‑1 (MQ=255) tACTGGAATTTATCGGAATGATGCTACTGGCGGTGGCGCTGCTGTCGGTAAACGCGTCCCCCTCGCCGCCCTAGGCCTTTTTTCGGcccg > 2:545788/1‑88 (MQ=255) cTGGAATTTATCGGAATGATGCTACTGGCGGTGGCGCTGCTGTCGGTAAGCGACTCCCTGTCGCTGCCTGAGCCATTTTCTCGGCCAGaa < 2:257538/90‑1 (MQ=255) ggAATTTATCGGAATGATGCTACTGGCGGTGGGGCTGCTGTCGGGAAAAGAACCCCCTTCGCCGCCCCAGCCATTTTTTCGGCCCGAAga > 1:248051/1‑89 (MQ=255) ggAATTTATCGGAATGATGCTACTGGCGGTGGCGCTGCTGTCGGGAAGGGACTCCCTCTCGCTGCCCGGGGCCTTTTTTCGGGCCGAAgg > 1:217073/1‑89 (MQ=255) ggAATGATGCTACTGGCGGTGGCGCCGCTGTCGGTAAGCGACTCCCCGTCGCTGCCTGAGCCATTTTTTCGGCCAGAAGTGGAGGTTCtg > 2:235088/1‑90 (MQ=255) tgCTACTGGCGGTGGCGCTGCTGTCGGTAAGCGACTCCCTGTCGCTGCCTGAGCCATTTTTTCGGCCAGAAGGGCAGATTTTGATGAttt > 2:331591/1‑90 (MQ=255) aCTGGCGGTGGCGCTGCTGTCGGGAAGGGGCTCCCCCTTGCGGCCTGGGACCTTTTTTCGGCCCGAAGGGCGGGGTCTGATGAttttttt > 1:293975/1‑88 (MQ=255) cGGTGGCGCTGCTGTCGGGGAGCGACTCCCCGTCGCTGCCTGAGCCCTTTTTTCGGCCCGAAGGGGAGAATTTGGTGATTTTTCTCgggg > 1:616659/1‑88 (MQ=255) ctgctgTCGGTAAGCGACTCCCTGTCGCTGCCTGAGCCATTTTCTCGGCCAGAAGTGCAGATTCTGATGATTTTTCTCGGTGTTTTGCTc < 2:544319/90‑1 (MQ=255) tCCCTGTCGCTGCCTGAGCCATTTTCTCGGCCAGAAGTGCAGATTCTGATGATTTTTCTCGGTGTTTTGCTCATGCTTCCCGCTGCggtg < 2:352370/90‑1 (MQ=255) tCCCTGTCGCTGCCTGAGCCATTTTCTCGGCCAGAAGTGCAGATTCTGATGATTTTTCTCGGTGTTTTGCTCATGCTTCCCGCTGCggtg < 2:616659/90‑1 (MQ=255) aGCCATTTTCTCGGCCAGAAGTGCAGATTCTGATGATTTTTCTCGGTGTTTTGCTCATGCTTCCCGCTGCGGTGGTGGTTATTCTTCAgg < 2:511717/90‑1 (MQ=255) | GATACTGGAATTTATCGGAATGATGCTACTGGCGGTGGCGCTGCTGTCGGTAAGCGACTCCCTGTCGCTGCCTGAGCCATTTTCTCGGCCAGAAGTGCAGATTCTGATGATTTTTCTCGGTGTTTTGCTCATGCTTCCCGCTGCGGTGGTGGTTATTCTTCAGG > NZ_CP009273/886404‑886567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |