| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,941,183 | 0 | T | G | 56.2% | 5.4 / 16.8 | 16 | T49P (ACC→CCC) | hdfR | HTH‑type transcriptional regulator HdfR |
| Reads supporting (aligned to +/- strand): ref base T (2/5); new base G (9/0); total (11/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.81e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.07e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC‑GGGTGAAAAGGTTCACACCCAGTTGATTTTCCAGTTGTCTGA‑TTCGAAAGCTCACTGCTGACTGGGTCAGATAGAGCGATTCAGCCGCTCGA > NZ_CP009273/3941097‑3941271 | ggcCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC‑GGGTGaa > 2:551124/1‑90 (MQ=255)ggcCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC‑GGGGGaa > 2:183633/1‑90 (MQ=255)ggcCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC‑GGGGGaa > 2:603076/1‑90 (MQ=255) gcCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC‑GGGTGaaa < 1:551124/90‑1 (MQ=255) tAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC‑GGGGGGAAAGGGTCACACCCAGGTGATTTTTCCGtttt > 2:371409/1‑88 (MQ=255) aGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGCGGGGGGAAAAAGTT‑ACACCCCGTTGGTTTTTTAGtttttt > 1:456642/1‑86 (MQ=255) aGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC‑GGGTGGAAAAGGTCACAACCAGGTTATTTTTCAGTTGttt > 1:208120/1‑88 (MQ=255) aGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC‑GGGGGAAAAGGGTCACACCCCGTTTATTTTTCACTTGTcc > 2:557238/1‑89 (MQ=255) aGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC‑GGGGGAAAAAGGTTACACCCCGTTTATTTTTCCGTTGttt > 2:193433/1‑88 (MQ=255) aGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC‑GGGGGAAAAAGGTCACACCCCGGTGATTTTTCACtttttt > 2:533801/1‑86 (MQ=255) ggCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC‑GGGTGAAAAGGTTCACACCCAGTTGATTTTCCAGTTGTCTg < 1:549117/90‑1 (MQ=255) gCGGTTAAACGGATATTGTTTCTGTGGC‑GGGTGAAAAGGTTCACACCCAGTTGATTTTCCAGTTGTCTGA‑TTCGAAAGCTCACTGCTGAc < 1:603076/90‑1 (MQ=255) atatTGTTTCTGTGGC‑GGGGGGAAAAGCTCACACCCAGCTTGTTTTTCATTTTTTTCATTTTGAAAG‑TCACCCCTGAGTGGGTCAgcaat > 2:360750/1‑86 (MQ=255) cTGTGGC‑GGGGGGAAAAGGTCACACCCCGTTGATTTTTCTGTTTTTTGG‑TTTGGAAAATCACTGCTGACTGGGGCGGATAAAGCGAttta > 1:410163/1‑88 (MQ=255) gggTGAAAAGGTTCACACCCAGTTGATTTTCCAGTTGTCTGA‑TTCGAAAGCTCACTGCTGACTGGGTCAGATAGAGCGATTCAGCCGCTc < 1:506873/90‑1 (MQ=255) gTGAAAAGGTTCACACCCAGTTGATTTTCCAGTTGTCTGA‑TTCGAAAGCTCACTGCTGACTGGGTCAGATAGAGCGGTTCAGCCGCTCGa < 2:331808/90‑1 (MQ=255) | GGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGTTAAACGGATATTGTTTCTGTGGC‑GGGTGAAAAGGTTCACACCCAGTTGATTTTCCAGTTGTCTGA‑TTCGAAAGCTCACTGCTGACTGGGTCAGATAGAGCGATTCAGCCGCTCGA > NZ_CP009273/3941097‑3941271 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |