| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 51 (1.530) | 22/168 | 0.3 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | 3512437 = | 0 (0.000) | intergenic (‑14/+387) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ | |||||
Only 100 of 104 total aligned reads displayed.
GAGCTAACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCA > NZ_CP009273/3512348‑3512524 | catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc < 2:910882‑M2/1‑1 (MQ=255)catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc < 2:618418‑M2/1‑1 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt > 2:937101‑M2/89‑90 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt > 2:555154‑M2/89‑90 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt > 2:415921‑M2/89‑90 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt > 1:231771‑M2/89‑90 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt < 1:253353‑M2/2‑1 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt > 2:256468‑M2/89‑90 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt > 1:873524‑M2/89‑90 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa > 2:484541‑M2/88‑90 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa < 2:280700‑M2/3‑1 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa < 1:324705‑M2/3‑1 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa < 1:665613‑M2/3‑1 (MQ=255) ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa > 2:245045‑M2/87‑90 (MQ=255) ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa > 2:562593‑M2/87‑90 (MQ=255) ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa < 2:132543‑M2/4‑1 (MQ=255) ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcacccgagaagaatttccccgcttattcgcaccttccCTaa < 1:14046‑M2/4‑1 (MQ=255) ttacgggagaaaaaatcggctcaaacacgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa < 1:278859‑M2/4‑1 (MQ=255) cgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGAc < 2:115734‑M2/7‑1 (MQ=255) cTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaa < 1:821694‑M2/90‑4 (MQ=255) cTGGCGCCCAATAGTGCTTTTTCCGGCACC‑ATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaag < 2:473628‑M2/90‑5 (MQ=255) tGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaag > 2:676977‑M2/1‑86 (MQ=255) gcgcCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggt < 2:802920‑M2/90‑7 (MQ=255) gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTc > 2:141496‑M2/79‑90 (MQ=255) cAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaa < 1:951853‑M2/90‑12 (MQ=255) aTAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaaca > 1:911787‑M2/1‑77 (MQ=255) tcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATg > 2:791909‑M2/72‑90 (MQ=255) tcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATg > 2:379840‑M2/72‑90 (MQ=255) gTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagt < 2:645303‑M2/90‑17 (MQ=255) gCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtcc < 1:949556‑M2/90‑19 (MQ=255) gCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtcc < 2:216858‑M2/90‑19 (MQ=255) cTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccc > 2:162995‑M2/1‑71 (MQ=255) cTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccc > 2:132740‑M2/1‑71 (MQ=255) cTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccc > 1:313667‑M2/1‑71 (MQ=255) tttttCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccct > 1:16894‑M2/1‑70 (MQ=255) tttttCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccct > 2:593816‑M2/1‑70 (MQ=255) ttttCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctg < 1:316835‑M2/90‑22 (MQ=255) tCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgata > 2:251794‑M2/1‑66 (MQ=255) tCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgata > 2:878210‑M2/1‑66 (MQ=255) ccGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatat > 2:418307‑M2/1‑65 (MQ=255) atgaagaaattaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGCCTATTCGTTAATGATAAACCCGCt < 1:469706‑M2/30‑1 (MQ=255) atgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCt < 1:577483‑M2/30‑1 (MQ=255) cGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatg > 2:726639‑M2/1‑64 (MQ=255) cGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatg > 1:645303‑M2/1‑64 (MQ=255) ggCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatga < 1:722454‑M2/90‑28 (MQ=255) aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc > 2:542583‑M2/58‑58 (MQ=255) aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc < 1:542583‑M2/1‑1 (MQ=255) cccATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatc > 2:523090‑M2/1‑59 (MQ=255) aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTc < 2:231771‑M2/36‑1 (MQ=255) aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCa > 1:683555‑M2/54‑90 (MQ=255) gCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttg > 1:360571‑M2/1‑52 (MQ=255) atgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAgc < 2:393881‑M2/43‑1 (MQ=255) gactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAgcgc < 2:611162‑M2/45‑1 (MQ=255) gactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAgcgc > 2:569427‑M2/46‑90 (MQ=255) cAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtca < 2:260918‑M2/90‑42 (MQ=255) cAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtca < 2:706418‑M2/90‑42 (MQ=255) cAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtca < 2:859671‑M2/90‑42 (MQ=255) aaCCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcat < 1:821706‑M2/90‑43 (MQ=255) tgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGcgccgc > 2:648222‑M2/43‑90 (MQ=255) gagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCa > 1:488525‑M2/42‑90 (MQ=255) agtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAg > 1:177438‑M2/41‑90 (MQ=255) gAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 2:604708‑M2/1‑43 (MQ=255) gAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga < 1:156291‑M2/90‑48 (MQ=255) gAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 2:475030‑M2/1‑43 (MQ=255) agccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACa < 1:940497‑M2/54‑1 (MQ=255) gccgagaagaatttccccgcttattcgcaccttccc > 2:464237‑M2/36‑36 (MQ=255) gccgagaagaatttccccgcttattcgcaccttccc < 1:464237‑M2/1‑1 (MQ=255) atatTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 1:706418‑M2/1‑38 (MQ=255) atatTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 2:675795‑M2/1‑38 (MQ=255) atatTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 2:643764‑M2/1‑38 (MQ=255) atatTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 1:346119‑M2/1‑38 (MQ=255) atTGCGTTTCTCTGCCATGTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcaggtttgtcatctggagccataa < 2:928304‑M2/90‑55 (MQ=255) agaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAAc > 1:815074‑M2/32‑90 (MQ=255) gCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac > 2:316835‑M2/1‑33 (MQ=255) gCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaaca < 2:117510‑M2/46‑14 (MQ=255) gCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaaca > 1:117510‑M2/1‑33 (MQ=255) gaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGaa < 2:554494‑M2/63‑1 (MQ=255) cGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca > 2:623008‑M2/1‑32 (MQ=255) cGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca > 2:654539‑M2/1‑32 (MQ=255) cGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca > 2:931476‑M2/1‑32 (MQ=255) gTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag > 1:260918‑M2/1‑31 (MQ=255) gTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag > 1:170266‑M2/1‑31 (MQ=255) tttCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg > 1:559797‑M2/1‑30 (MQ=255) atttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc < 1:777061‑M2/65‑1 (MQ=255) atttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc < 1:569427‑M2/65‑1 (MQ=255) tttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAcc < 2:907849‑M2/66‑1 (MQ=255) ttCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg < 2:642102‑M2/90‑62 (MQ=255) tctcTGCCATTTTTTCGCTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggcgccatagaacagggt > 1:933220‑M2/1‑28 (MQ=255) ctctGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt > 2:756371‑M2/1‑27 (MQ=255) ctctGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt > 2:60664‑M2/1‑27 (MQ=255) ctctGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt > 2:914854‑M2/1‑27 (MQ=255) cccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCAt > 2:921164‑M2/21‑90 (MQ=255) aTTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg > 2:414387‑M2/1‑20 (MQ=255) tCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat > 1:2201‑M2/1‑14 (MQ=255) ttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGaaa > 2:817378‑M2/5‑68 (MQ=255) ttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGaaa < 1:817378‑M2/64‑1 (MQ=255) ttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGt > 1:522100‑M2/5‑90 (MQ=255) ttccCTAAGACTATTCGTTAATGATAAACCAGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGt > 1:15704‑M2/5‑90 (MQ=255) actactAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact < 1:438264‑M2/90‑82 (MQ=255) ccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCa < 2:488525‑M2/88‑1 (MQ=255) | GAGCTAACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCA > NZ_CP009273/3512348‑3512524 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |