| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,631,618 | Δ1 bp | coding (617/1500 nt) | pitA → | inorganic phosphate transporter PitA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,631,617 | 0 | C | . | 100.0% | 67.7 / NA | 16 | coding (616/1500 nt) | pitA | inorganic phosphate transporter PitA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (9/7); total (9/7) | |||||||||||
GTCGCTACTGGAGCGGCACCAAGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAG > NZ_CP009273/3631534‑3631698 | gTCGCTACTGGAGCGGCACCAAGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAG‑CGCCGtt > 2:23567/1‑90 (MQ=255) cTGGAGCGGCACCAAGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAG‑CGCCGTTCTGGAcg < 1:129962/90‑1 (MQ=255) ggCACCAAGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAG‑CGCCGTTCTGGACGCGTATTg > 1:144167/1‑90 (MQ=255) ccTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAG‑CGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCggcgtg < 1:272809/90‑1 (MQ=255) tGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAG‑CGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCggcgtggc > 2:229928/1‑90 (MQ=255) gACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAG‑CGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCggcgtggcg > 2:257252/1‑90 (MQ=255) cAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAG‑CGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGGGGCGTTTTc > 1:64585/1‑90 (MQ=255) aGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAG‑CGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTAt > 1:191842/1‑74 (MQ=255) aGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAG‑CGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTAt < 2:191842/74‑1 (MQ=255) aGCGTGAAAAGAAAGACGGCAAGAAAAAG‑CGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACgg < 2:197736/90‑1 (MQ=255) gCGTGAAAAGAAAGACGGCAAGAAAAAG‑CGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGgc > 1:321978/1‑90 (MQ=255) gCGTGAAAAGAAAGACGGCAAGAAAAAG‑CGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGgc > 2:284076/1‑90 (MQ=255) gaCGGCAAGAAAAAG‑CGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTc < 1:305775/90‑1 (MQ=255) gaCGGCAAGAAAAAG‑CGCCGTTCTGGACGCGTATTGCGCTGAACCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTc < 1:196732/90‑1 (MQ=255) cAAGAAAAAG‑CGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGaaa < 2:5150/90‑1 (MQ=255) aaGAAAAAG‑CGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAg > 1:205683/1‑90 (MQ=255) | GTCGCTACTGGAGCGGCACCAAGAAACGCGCCCGTATCCACCTGACCCCAGCGGAGCGTGAAAAGAAAGACGGCAAGAAAAAGCCGCCGTTCTGGACGCGTATTGCGCTGATCCTTTCCGCTATCGGCGTGGCGTTTTCGCACGGCGCGAACGATGGTCAGAAAG > NZ_CP009273/3631534‑3631698 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |