Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1193290	1193305	16	2 [0]	[1] 2	BW25113_RS05920	hypothetical protein

CTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTT  >  NZ_CP009273/1193243‑1193289                                               | cTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCtt  <  1:70261/47‑1 (MQ=255) cTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCtt  >  2:70261/1‑47 (MQ=255)                                               | CTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTT  >  NZ_CP009273/1193243‑1193289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑