Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1294877	1294928	52	2 [0]	[1] 3	BW25113_RS25865	hypothetical protein

AACTGCTTCTCCTCACCATCATGTTATTTTCGCCAC  >  NZ_CP009273/1294841‑1294876                                    | aaCTGCTTCTCCTCACCATCATGTTATTTTCGCcac  <  1:107180/36‑1 (MQ=255) aaCTGCTTCTCCTCACCATCATGTTATTTTCGCcac  >  2:107180/1‑36 (MQ=255)                                    | AACTGCTTCTCCTCACCATCATGTTATTTTCGCCAC  >  NZ_CP009273/1294841‑1294876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑