Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1031562	1031581	20	2 [0]	[1] 3	hyaD	hydrogenase 1 maturation protease

CCAGCACATATTGCCCTCGTCGGTCTGCAACCCGCAATGCTCGACGACTACGGCGGTAGCCTGAGCGAACTGGCACGGGAGCAACTGCCCGCTGCGGAACAGGCGGC  >  NZ_CP009273/1031565‑1031671                  |                                                                                          ccAGCACATATTGCCCTCGTCGGTCTGCAACCCGCAATGCTCGACGACTACGGCGGTAGCCTGAGCGAACTGGCACGGGAGCAACTGccc                   <  2:52365/90‑1 (MQ=255)                  cgtcgGTCTGCAACCCGCAATGCTCGACGACTACGGCGGTAGCCTGAGCGAACTGGCACGGGAGCAACTGCCCGCTGCGGGACAggcggc  >  2:306765/1‑90 (MQ=255)                  cgtcgGTCTGCAACCCGCAATGCTCGACGACTACGGCGGGAGCCTGAGCGGACCGGCCCCGGAGGCACCGCCCCCCGGGGGACAggcggc  >  1:175531/1‑90 (MQ=255)                  |                                                                                          CCAGCACATATTGCCCTCGTCGGTCTGCAACCCGCAATGCTCGACGACTACGGCGGTAGCCTGAGCGAACTGGCACGGGAGCAACTGCCCGCTGCGGAACAGGCGGC  >  NZ_CP009273/1031565‑1031671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑