Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1046355	1046365	11	2 [0]	[1] 2	BW25113_RS05135/cspH	IS1‑like element IS1D family transposase/cold shock‑like protein CspH

GTATGATGTTGACTATTTCACTATTCCAATAAAACCAGTCAGCTTTAAACAAGCAGCGTCATATTAAGAGAGATAAACATTTGCCGCTGTTGGTCCTCGC  >  NZ_CP009273/1046356‑1046455           |                                                                                          gTATGATGTTGACTATTTCACTATTCCAATAAAACCAGTCAGCTTTAAACAAGCAGCGTCATATTAAGAGAGATAAACATTTGCCGCTGt            >  2:306098/1‑90 (MQ=255)           gACTATTTCACTATTCCAATAAAACCAGTCAGCTTTAAACAAGCAGCGTCATATTAAGAGAGATAAACATTTGCCGCTGTTGGTCCTCGc  >  1:69508/1‑90 (MQ=255)           |                                                                                          GTATGATGTTGACTATTTCACTATTCCAATAAAACCAGTCAGCTTTAAACAAGCAGCGTCATATTAAGAGAGATAAACATTTGCCGCTGTTGGTCCTCGC  >  NZ_CP009273/1046356‑1046455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑