Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1183304	1183319	16	2 [0]	[0] 5	roxA	[50S ribosomal protein L16]‑arginine 3‑hydroxylase

AGATGCGGGCCGACGCCGCCGCCGGGTACAGAAAAAGAAATCATCAGATCATCAATACGCCAGTCCGGTAGTTCACGGAACGGTCGCATC  >  NZ_CP009273/1183320‑1183409 |                                                                                          agaTGCGGGCCGACGCCGCCGCCGGGTACAGAAAAAGa                                                      >  1:86811/1‑38 (MQ=255) agaTGCGGGCCGACGCCGCCGCCGGGTACAGAAAAAGa                                                      <  2:86811/38‑1 (MQ=255) agaTGCGGGCCGACGCCGCCGCCGGGTACAGAAAAAGAAATCATCAGATCATCAATACGCCAGTCCGGTAGTTCACGGaa            >  1:4481/1‑80 (MQ=255) agaTGCGGGCCGACGCCGCCGCCGGGTACAGAAAAAGAAATCATCAGATCATCAATACGCCAGTCCGGTAGTTCACGGaa            <  2:4481/80‑1 (MQ=255) agaTGCGGGCCGACGCCGCCGCCGGGTACAGAAAAAGAAATCATCAGATCATCAATACGCCAGTCCGGTAGTTCACGGAACGGTCGCATc  >  1:235053/1‑90 (MQ=255) |                                                                                          AGATGCGGGCCGACGCCGCCGCCGGGTACAGAAAAAGAAATCATCAGATCATCAATACGCCAGTCCGGTAGTTCACGGAACGGTCGCATC  >  NZ_CP009273/1183320‑1183409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑