Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	519911	519954	44	3 [1]	[1] 3	rhsD	rhs element protein RhsD

GAAGGCGGGGCCGGGCTGAAACGGGTGGTGAAAAAAGAACTGGCGGACGGCAGCGTCACGCGCAGCGGGTATGACGCGGCAGGAAGGCTC  >  NZ_CP009273/519932‑520021                        |                                                                   gAAGGCGGGGCCGGGCTGAAACGGGTGGTGAAAAAAGAACTGGCGGACGGCAGCGTCACGCGCAGCGGGTATGACGCGGCAGGAAGGCTc  >  2:226230/1‑90 (MQ=255)                        ggtggtGAAAAAAGAACTGGCGGACGGCAGCGTCACGCGCAGCGGGTATGAc                 <  1:109383/52‑1 (MQ=255)                        ggtggtGAAAAAAGAACTGGCGGACGGCAGCGTCACGCGCAGCGGGTATGAc                 >  2:109383/1‑52 (MQ=255)                        |                                                                   GAAGGCGGGGCCGGGCTGAAACGGGTGGTGAAAAAAGAACTGGCGGACGGCAGCGTCACGCGCAGCGGGTATGACGCGGCAGGAAGGCTC  >  NZ_CP009273/519932‑520021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑