| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,368,606 | 0 | A | C | 54.5% | 6.9 / 12.7 | 11 | G52G (GGT→GGG) | ampC | BlaEC family class C beta‑lactamase |
| Reads supporting (aligned to +/- strand): ref base A (5/0); new base C (0/6); total (5/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.16e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.28e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATT > NZ_CP009273/4368521‑4368693 | ccGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCt > 2:197326/1‑90 (MQ=255) gTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTaccgccaccgcc > 1:269309/1‑90 (MQ=255) gggCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCtt > 1:94308/1‑90 (MQ=255) ttttttGGCTATGCCCGCACCCCCCCGGGAAAAGAAATAAGTTTTCCCCTAAAAAATTCCCCCCCCCGCCATACCCGGGATCTTttgttg < 2:191716/89‑1 (MQ=255) ttttgGGCGATGCCCGCATACCCCCAGAAAAAAAAATAAGTTTTCCCTTAAAAAATCCCCCCCACCGCCATACCCGGGATCTTTTGTTGc < 2:271887/90‑1 (MQ=255) gATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAg > 1:41733/1‑90 (MQ=255) cgCCCCAGGAAAGGTAATAAGTTTTCCCTTAAAAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATtg < 2:41733/89‑1 (MQ=255) cccAGGTAAAGTAATAAGTTTTCCCCTGAAAAATTCCCGCCACCGCCATACGCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGc < 1:112970/90‑1 (MQ=255) cAGGAAAAGAAAAAAGTTTTCCCCTAAAAATTTCCCCCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGa < 2:94029/90‑1 (MQ=255) aaaGTAATAAGTTTTCCCCTGATAAATTCCCGCCCCCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGcac < 2:6564/90‑1 (MQ=255) ttACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGAtt > 2:253800/1‑90 (MQ=255) | CCGAACCTAACTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATT > NZ_CP009273/4368521‑4368693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |