| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 269666 = | NA (NA) | 16 (0.870) | 10/166 | 0.5 | 94.1% | intergenic (+2/+146) | ykfC/BW25113_RS01325 | reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase |
| ? | NZ_CP009273 | = 671829 | 1 (0.050) | coding (175/978 nt) | ybeQ | SEL1‑like repeat protein | |||||
GAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAATAAAACCCAACAATAT > NZ_CP009273/671743‑671918 | gaagaTGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGgga > 1:311519‑M2/1‑87 (MQ=255) ttATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaat < 1:518648‑M2/90‑26 (MQ=255) tCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcag > 1:273519‑M2/1‑47 (MQ=255) aTACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga < 1:115286‑M2/90‑67 (MQ=255) tACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgag < 2:317078‑M2/90‑68 (MQ=255) gtgCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga < 1:468870‑M2/90‑72 (MQ=255) gtgCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga < 2:312607‑M2/90‑72 (MQ=255) gtgCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga < 2:67727‑M2/90‑72 (MQ=255) gtgCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga < 2:399753‑M2/90‑72 (MQ=255) gtgCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATtat > 2:406342/1‑90 (MQ=255) gCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatt < 1:283737‑M2/90‑74 (MQ=255) gCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatt < 2:283885‑M2/90‑74 (MQ=255) gCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatt < 2:366769‑M2/90‑74 (MQ=255) tCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttt < 2:211023‑M2/90‑77 (MQ=255) cTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa < 2:84742‑M2/90‑87 (MQ=255) tGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:323940‑M2/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 1:2231‑M2/90‑90 (MQ=255) | GAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAATAAAACCCAACAATAT > NZ_CP009273/671743‑671918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |