Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2988546	2988576	31	2 [0]	[1] 3	BW25113_RS14850/BW25113_RS26010	response regulator transcription factor/hypothetical protein

CATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAA  >  NZ_CP009273/2988496‑2988545                                                  | catcCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGaa  <  1:415082/50‑1 (MQ=255) catcCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGaa  >  2:415082/1‑50 (MQ=255)                                                  | CATCCCTTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAA  >  NZ_CP009273/2988496‑2988545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑