Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1387340	1387365	26	2 [0]	[1] 2	pgrR/mppA	DNA‑binding transcriptional regulator PgrR/murein tripeptide ABC transporter substrate‑binding protein MppA

AGTGTTCGGAGTTCTATGTGCTTTACCGCATTTTGGAGACTATT  >  NZ_CP009273/1387296‑1387339                                            | aGTGTTCGGAGTTCTATGTGCTTTACCGCATTTTGGAGACtatt  <  1:49698/44‑1 (MQ=255) aGTGTTCGGAGTTCTATGTGCTTTACCGCATTTTGGAGACtatt  >  2:49698/1‑44 (MQ=255)                                            | AGTGTTCGGAGTTCTATGTGCTTTACCGCATTTTGGAGACTATT  >  NZ_CP009273/1387296‑1387339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑