Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1524250	1524337	88	2 [0]	[1] 3	BW25113_RS07645/BW25113_RS26145	RHS repeat protein/hypothetical protein

TTCTGAAAAAAATATTATTTATAAAATAATTAATGACCAAAAAATTAGTAGAGGGAATGGTCATTTTATAAGTATAATGGTTAATAATTA  >  NZ_CP009273/1524322‑1524411                 |                                                                          ttCTGAAAAAAATATTATTTATAAAATAATTAATGACCAAAAAATTAGTAGAGGGAATGGTCATTTTATAAGTATAATGGTTAATAATTa  <  1:42772/90‑1 (MQ=255)                 atttatAAAATAATTAATGACCAAAAAATTAGTaga                                        <  1:283120/36‑1 (MQ=255)                 atttatAAAATAATTAATGACCAAAAAATTAGTaga                                        >  2:283120/1‑36 (MQ=255)                 |                                                                          TTCTGAAAAAAATATTATTTATAAAATAATTAATGACCAAAAAATTAGTAGAGGGAATGGTCATTTTATAAGTATAATGGTTAATAATTA  >  NZ_CP009273/1524322‑1524411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑