Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2009229	2009245	17	3 [1]	[0] 3	fliG	flagellar motor switch protein FliG

GTGCGTCTGTCGCAGGTGGAAAACGAACAGAAAGCGATTCTGCTGATTGTGCGCCGCCTTGCCGAAACTGGCGAGATGGTAATTGGCAGC  >  NZ_CP009273/2009246‑2009335 |                                                                                          gTGCGTCTGTCGCAGGTGGAAAACGAACAGAAAGCGATTCTGCTGATTGTGCgccgcc                                  >  1:172437/1‑58 (MQ=255) gTGCGTCTGTCGCAGGTGGAAAACGAACAGAAAGCGATTCTGCTGATTGTGCgccgcc                                  <  2:172437/58‑1 (MQ=255) gTGCGTCTGTCGCAGGTGGAAAACGAACAGAAAGCGATTCTGCTGATTGTGCGCCGCCTTGCCGAAACTGGCGAGATGGTAATTGGCAgc  >  2:259084/1‑90 (MQ=255) |                                                                                          GTGCGTCTGTCGCAGGTGGAAAACGAACAGAAAGCGATTCTGCTGATTGTGCGCCGCCTTGCCGAAACTGGCGAGATGGTAATTGGCAGC  >  NZ_CP009273/2009246‑2009335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑