| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,401,195 | 0 | T | G | 63.2% | 0.6 / 12.7 | 19 | V77G (GTA→GGA) | panF | sodium/pantothenate symporter |
| Reads supporting (aligned to +/- strand): ref base T (5/2); new base G (12/0); total (17/2) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.23e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.96e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCT‑GGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGCGCCGCTAC > NZ_CP009273/3401109‑3401280 | ggCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCCCGGGCCGGCTTTAAAAACGGGGTGGGCG‑GGGTGtt > 1:36604/1‑90 (MQ=255)ggCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGGT‑GGGGAtt > 2:32072/1‑90 (MQ=255) tataTCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTTTAAAAACGGGGTGGGGT‑GGGGGTTTCTGGCGATGATTTAACTTTCt > 2:332467/1‑90 (MQ=255) tatCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAAAACGGGGTGGGGT‑GGGGATTTTTGGGGATGGTTTAGCTTCCTGc > 2:146745/1‑90 (MQ=255) gTGCCAGTTCGTTTATCGGCGGGCCCGGGGCTGCTTATAAAAACGGGCTGGGCT‑GGGGATTGCTGGCGGTGATTTAGCTTCCTTCGGTCt > 2:227861/1‑90 (MQ=255) gTGCCAGTTCGTTTATCGGCGGGCCCGGAGGTGCGTTTAAAAACGGGGCGGGCTGGGGTTTTGTTGGGGA‑GATTCTGGTTCCTGCAGttt > 1:405425/1‑88 (MQ=255) gTGCCAGTTCGTTTATCGGCGGGCCAGGGGGTGCTTTTAAAAAAGGGGTGGGGT‑GGGGGTTTGTGGGGGTGGTTTAGCTTCCTTCCGTCt > 1:98875/1‑90 (MQ=255) gTGCCAGTTCGTTTATCGGCGGGCCAGGGGGGGCTTTTTAATACGGGGTGGGGT‑GGGGATTTCTGGGGGTGATTTAACTTCCTGCAGGCt > 2:455725/1‑90 (MQ=255) gTGCCAGTTCGTTTATCGGCGGGCCAGGAGGTGCTTATAAATACGGGCTGGGGT‑GGGGATTTCTGGCGATGATTCAGCTTCCTTCAGTCt > 2:83190/1‑90 (MQ=255) gTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCT‑GGGGATTGCTGGCGGTGATTCAGCTTCCTGCAGTCt > 2:202662/1‑90 (MQ=255) gTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAAAAAGGGGGGGGGG‑GGGGATTGCTGGGGGTGGTTTAGCTTTCTGCCGTCt > 1:388893/1‑90 (MQ=255) cAGTTCGTTTATCGGCGGGCCAGGGGCTGCTTATAAATAAGGGCTGGGGG‑GGGGATTGCTGGGGGTGATTTAGCTTTCTGCAGGCTgggt > 1:22289/1‑88 (MQ=255) gTTCGTTTATCGGCGGGCCAGGAGGTGCTTTTAAAAAAGGGGTGGGGT‑GGGGATTGGTGGGGGTGGTTTAGCTTCCTTCCGTCTGGCttt > 1:205875/1‑90 (MQ=255) gTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCT‑GGGGATTGCTGGCGATGATTCAGCTTCCTGCAGGCTGGCttt > 2:182541/1‑90 (MQ=255) tgctTATAAATACGGGCTGGGCT‑GGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGtt > 1:315639/1‑90 (MQ=255) tgctTATAAATACGGGCTGGGCT‑GGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGtt > 1:286940/1‑90 (MQ=255) ggctgggct‑gGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTgcgc > 2:394961/1‑90 (MQ=255) ggctgggct‑gGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTgcgc < 2:405425/90‑1 (MQ=255) t‑gggTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGCGCCGCTAc < 1:354199/90‑1 (MQ=255) | GGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCT‑GGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGCGCCGCTAC > NZ_CP009273/3401109‑3401280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |