Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092733,571,6610AC58.3% 7.5 / 12.9 12G142G (GGT→GGG) gntRgluconate operon transcriptional repressor GntR
Reads supporting (aligned to +/- strand):  ref base A (5/0);  new base C (0/7);  total (5/7)
Fisher's exact test for biased strand distribution p-value = 1.26e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.93e-03
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

GCTTCAAAGTTATCAAAACCGACGGCGATATCAAGGCATGGCGACTTGCTGTCCATCAGTTCCACCACGGGAATACCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAGGATCAGGCCGTCGATATTCCAGGAGAGCAT  >  NZ_CP009273/3571587‑3571744
                                                                          |                                                                                   
cctTAAAATTTAAAAAACCCGACGGCAATACAAAGGCAGGGCGACTTGCTGCCCATCAGTCCCCCCACGGAAATCCCCGCCACTTCAatc                                                                      <  2:527613/89‑1 (MQ=255)
  ttCAAAGTTATCAAAACCGACGGCGATATCAAGGCATGGCGACTTGCTGTCCATCAGTTCCACCACGGGAATACCCGCCACTTCAatcat                                                                    >  2:369123/1‑90 (MQ=255)
          tATCAAAACCGACGGCGATATCAAGGCATGGCGACTTGCTGTCCATCAGTTCCACCACGGGAATACCCGCCACTTCAATCATCTTTAAgg                                                            >  1:235515/1‑90 (MQ=255)
                 cccGACGGCGATATCAAGGCATGGCGTCTTGCTGTCCATCAGTCCCCCCAGGGAAATCCCCGCCACTTCAATCATCTTTAAGGTGCgcgg                                                     <  2:76256/89‑1 (MQ=255)
                        gCGATATCAAGGCATGGCGACTTGCTGTCCATCAGTTCCACCACGGGAATACCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTgg                                              >  1:76256/1‑90 (MQ=255)
                                agggCAGGGCGTTTTGCTGCCCATCATTCCCCCCGGGGAAATCCCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTc                                      <  1:52247/88‑1 (MQ=255)
                                    cagggCGCCTTGCTCCCCATCATTCCCCCCACGGAAATCCCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTg                                  <  2:205009/87‑1 (MQ=255)
                                     aTGGCGACTTGCTGTCCATCAGTTCCACCACGGGAATACCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGa                                 >  1:205009/1‑90 (MQ=255)
                                                     gaTCTGTCCCCCCACGGGAACCCCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAGGATCAGGCCGTCGat                 <  1:253289/89‑1 (MQ=255)
                                                     cATCAGTCCCCCCGGGGAAATCCCCGCCACTTCAATCATCTTTAAGGTGCACGGCGTGTGGGTACGTTCGGTGAGGATCAGGCCGTCGat                 <  1:177042/90‑1 (MQ=255)
                                                     cATCAGTCCCACCAGGGAAATCCCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAGGATCAGGCCGTCGat                 <  2:235515/90‑1 (MQ=255)
                                                                    gggAATACCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAGGATCAGGCCGTCGATATTCCAGGAGAGCAt  >  1:127249/1‑90 (MQ=255)
                                                                          |                                                                                   
GCTTCAAAGTTATCAAAACCGACGGCGATATCAAGGCATGGCGACTTGCTGTCCATCAGTTCCACCACGGGAATACCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAGGATCAGGCCGTCGATATTCCAGGAGAGCAT  >  NZ_CP009273/3571587‑3571744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑