| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,613,378 | T→C | M1A (GTG→GCG) † | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,613,378 | 0 | T | C | 97.3% | 135.3 / ‑3.5 | 37 | M1A (GTG→GCG) † | marR | multiple antibiotic resistance transcriptional regulator MarR |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (20/16); total (20/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.16e-01 | |||||||||||
TCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCC > NZ_CP009273/1613301‑1613458 | tCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAg < 1:326710/90‑1 (MQ=255)tCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAg < 1:456015/90‑1 (MQ=255) ttGCCTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAAt < 2:526849/90‑1 (MQ=255) ttGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAAt > 2:199826/1‑90 (MQ=255) taCTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAattat < 1:231618/90‑1 (MQ=255) taCTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAattat < 2:428447/90‑1 (MQ=255) taCTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAattat < 2:1054869/90‑1 (MQ=255) tGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCa > 2:672968/1‑90 (MQ=255) tGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGAACCAGCGATCTGTTCAATGAAATTATTCCa > 2:1112327/1‑90 (MQ=255) gggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTggg < 2:94398/90‑1 (MQ=255) tattatCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCtt < 1:199826/90‑1 (MQ=255) ttatCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTaa < 1:1187289/90‑1 (MQ=255) atCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATc > 1:1109736/1‑90 (MQ=255) atCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATc > 2:522469/1‑90 (MQ=255) atCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATc > 2:235498/1‑90 (MQ=255) cccTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCat < 1:382188/90‑1 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGCGaaa > 2:782348/1‑37 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGCGaaa < 1:782348/37‑1 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCatat > 1:955263/1‑90 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCatat > 2:609080/1‑90 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCat > 1:349672/1‑88 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCat > 1:385886/1‑88 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCat < 2:349672/88‑1 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCat < 2:385886/88‑1 (MQ=255) gCAACTAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATgg > 1:3548/1‑90 (MQ=255) tAATTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAAt > 1:179968/1‑90 (MQ=255) aaTTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATc > 1:992209/1‑90 (MQ=255) aaTTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATc < 2:695470/90‑1 (MQ=255) aTTACTTGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCa > 2:185164/1‑90 (MQ=255) tGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTaa < 2:1086390/68‑1 (MQ=255) tGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTaa > 1:1086390/1‑68 (MQ=255) tGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAgaagaa > 2:234189/1‑90 (MQ=255) tGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAgaagaa > 1:649555/1‑90 (MQ=255) tGCCAGGGCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAgaagaa > 2:118577/1‑90 (MQ=255) gggCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATc > 1:928014/1‑90 (MQ=255) gCAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGc < 2:1197149/90‑1 (MQ=255) cAACTAATGCGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGcc < 2:928014/90‑1 (MQ=255) | TCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCC > NZ_CP009273/1613301‑1613458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |