| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,360,810 | 0 | A | G | 53.1% | 34.7 / 49.9 | 32 | G87G (GGA→GGG) | arnC | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| Reads supporting (aligned to +/- strand): ref base A (0/15); new base G (17/0); total (17/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.77e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.20e-07 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGC‑GACTTAATTATTA‑CCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGC > NZ_CP009273/2360723‑2360899 | ggTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGtt > 2:633279/1‑90 (MQ=255)ggTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGtt > 2:1690304/1‑90 (MQ=255)ggTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGtt > 2:1531057/1‑90 (MQ=255) aaGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTc < 2:916097/90‑1 (MQ=255) aaGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTc < 2:467122/90‑1 (MQ=255) gCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGc < 1:1094465/90‑1 (MQ=255) ggAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGGTTAGTTACGTTTCTGGC‑gg > 2:1399773/1‑89 (MQ=255) gaACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGC‑GACtt < 1:1387018/90‑1 (MQ=255) gaACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGC‑GACtt < 1:1577218/90‑1 (MQ=255) aaCAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGC‑GACTTa < 2:706907/90‑1 (MQ=255) gCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTCAGTc > 2:2240085/1‑69 (MQ=255) gCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTc < 1:2240085/69‑1 (MQ=255) cATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGC‑GACTTAattatt < 2:1992147/90‑1 (MQ=255) atatTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGC‑GACTTAAttatta < 1:800218/90‑1 (MQ=255) atTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGGTTCGTCACGGTACTGGC‑GGCTTAattattttc > 1:1453749/1‑87 (MQ=255) gtgtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTTGTTACGTTTCTTGG‑GGCTTTATTTTTT‑TCCtt > 2:1180423/1‑90 (MQ=255) gtgtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTCACGTTTCTGGG‑GGCTTTATTTTTT‑TCCtt > 2:712296/1‑90 (MQ=255) gtgtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGGTTAGTCACCTTTCTTGC‑GGCTTTATTTTTT‑TCCtt > 2:847654/1‑90 (MQ=255) gtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTTACCGTACTTGC‑GGCTTTATTATTT‑TCCtttt > 2:1271085/1‑88 (MQ=255) gtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTCCCGTTACTGGCGGCCTTAATTTTTC‑CCCTTg > 1:242948/1‑90 (MQ=255) gtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTCACGTTTCTTGC‑GGCTTAATTATTATCCCttt > 1:679150/1‑89 (MQ=255) gtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTCACGTTTCTGGG‑GGCCTAATTATTT‑TCCttca > 2:624345/1‑88 (MQ=255) gtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTCAGTc > 2:187506/1‑59 (MQ=255) gtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTc < 1:187506/59‑1 (MQ=255) cTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGGTTAGTCACCTTACTTGG‑GGCTTAAATATTT‑TCCTTTATg > 2:510486/1‑90 (MQ=255) tATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGC‑GACTTAATTATTA‑CCCTTGATGc < 1:235612/90‑1 (MQ=255) tttGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGC‑GACTTAATTATTA‑CCCTTGATGCCGa < 2:2063724/90‑1 (MQ=255) tttGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGC‑GACTTAATTATTA‑CCCTTGATGCCGa < 1:385336/90‑1 (MQ=255) tGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGC‑GACTTAATTATTA‑CCTTTGATGCCGAtc < 2:1020962/90‑1 (MQ=255) aCCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTAGTCACGTTACTGGG‑GGCTTTATTTTTA‑CCCTTTTTGCCGATCTCCAGa > 1:534170/1‑90 (MQ=255) gggCAACATTCAGCGATTATGGCGGGGTTCAGTCACCTTTCTTGC‑GGCCTAATTTTTA‑TCCTTTTTTCCCGTCTCCAGAAACcccccaaa > 2:1860034/1‑86 (MQ=255) cAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGC‑GACTTAATTATTA‑CCCTTGATGCCGATCTCCAGAATCCGCCAgaagaa < 2:1639947/90‑1 (MQ=255) aTTCAGTCCCGTTACTGGC‑GCCTTAATTATTC‑CCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGc < 2:84993/90‑1 (MQ=255) | GGTCGAAGCCTCACAAGCGGAGAACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGC‑GACTTAATTATTA‑CCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGC > NZ_CP009273/2360723‑2360899 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |