| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 725,104 | 0 | T | G | 54.5% | 5.5 / 10.0 | 11 | G22G (GGT→GGG) | rhsC | rhs element protein RhsC |
| Reads supporting (aligned to +/- strand): ref base T (2/3); new base G (6/0); total (8/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.06e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.05e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGT > NZ_CP009273/725019‑725184 | gATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAg > 2:422282/1‑90 (MQ=255) gAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCCGGGTTCAGCCGGGGGACGCATc > 1:234097/1‑90 (MQ=255) gAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGGACGCATc > 1:234096/1‑90 (MQ=255) aGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCg < 2:146405/90‑1 (MQ=255) aTGAGCGGAAACCCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGcc < 1:285230/90‑1 (MQ=255) gCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCGTTGGCCCGGGGTCAGCCGGGGTGCGCCTCGGCGgccccc > 1:385646/1‑89 (MQ=14) cGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCAc < 1:422282/90‑1 (MQ=255) ggAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCAGTGGCCAGGGGTCAGCCGGGGGACGCATCGGGGCCCCCAcc > 2:285230/1‑90 (MQ=14) ggcggcGCGTCAGGGCGACATGACGCAGTATGGCGGGAGGATTTGCCAGGGGTCAGCCGGGGGGCGCATCGGTGGCCCCCCCGGCGTggg > 1:477284/1‑89 (MQ=11) aGCATTGTCCAGGGGTCAGCCGGGGGACGCATCGGGGCCCCCACCGGCGGGGCCTGTTCGGGGGGCCCCGGCGGGGGGGCGGCCCGcccc > 1:196054/1‑88 (MQ=14) tGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGt > 2:233460/1‑90 (MQ=255) | GATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGT > NZ_CP009273/725019‑725184 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |