| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 737,562 | 0 | A | C | 54.5% | 7.4 / 13.1 | 11 | S151A (TCT→GCT) | dtpD | dipeptide permease DtpD |
| Reads supporting (aligned to +/- strand): ref base A (5/0); new base C (0/6); total (5/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.16e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.28e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGTTGGCTCATACAGCTCGCCGAGCAGACAGCT > NZ_CP009273/737506‑737649 | cATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGaa > 1:305827/1‑90 (MQ=255) gCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCg > 2:178406/1‑90 (MQ=255) tCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGa > 1:257905/1‑90 (MQ=255) tCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGa > 2:163769/1‑90 (MQ=255) ggCGTAACCCAAGGCGATGGGAGCGATAATAGCCCCCCCTTTCCCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGt < 1:233076/90‑1 (MQ=37) ggCGTAACCACGGGCGATAGGTGCAATAATAGCCCCCCCGTTCCCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGt < 2:305827/90‑1 (MQ=38) ggCGAACCCACGGGCGATAGGGGCGAAAAAAGCCCCCCCTTTCCCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGt < 1:178406/90‑1 (MQ=25) ggCGAACCCACAGGCGATAGGGGCAAAAATAGCCCCCCCGTTCCCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGt < 1:278187/90‑1 (MQ=37) cGTAACCACAGGCGATAGGTGCGATAATAGCCCCCCCGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGTTg < 2:537620/90‑1 (MQ=255) tAACCCCAGGCTAAGGGAGCAATAAAATCCCCCCCTTTCCCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGTTGGc < 2:405794/90‑1 (MQ=255) aGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGTTGGCTCATACAGCTCGCCGAGCAGACAGCt > 1:444172/1‑90 (MQ=255) | CATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGTTGGCTCATACAGCTCGCCGAGCAGACAGCT > NZ_CP009273/737506‑737649 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |