| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,370,606 | 0 | A | C | 54.5% | 9.8 / 13.5 | 11 | T106P (ACC→CCC) | ycjR | sugar phosphate isomerase/epimerase |
| Reads supporting (aligned to +/- strand): ref base A (4/1); new base C (0/6); total (4/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.52e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.28e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCGAAGCGCTGGCAGAAGTGGGCGGTAAAGGCATCGTCGTTCCGGCTGCGTGGGGCATGTTTACCTTCCGCTTACCGCCGATGACCTCGCCGCGTAGCCTGGACGGCGACCGCAAAATGGTGAGTGATTCCCTGCGCGTACT > NZ_CP009273/1370544‑1370685 | ccGAAGCGCTGCCAGAAGTGGGCGGTAAAGGCATCGTCGTTCCGGCTGCGTGGGGCATTTTTCCCTTCCGCTTACCGCCGATGACCTcgc < 2:257712/89‑1 (MQ=255) cgcgGGCAGAAGGGGGGGGTAAAGGCATCGTCGTTCCGGCTGCGGGGGGCATGTTTCCCTTCCGCTTACCGCCGATGACCTCGCCGCGTa < 1:162586/90‑1 (MQ=255) gcTGGCAGAAGTGGGCGGTAAAGGCATCGTCGTTCCGGCTGCGTGGGGCATGTTTACCTTCCGCTTACCGCCGATGACCTCGCCGCGTAg > 1:77/1‑90 (MQ=255) aGTGGGCGGTAAAGGCATCGTCGTTCCGGCTGCGTGGGGCATGTTTACCTTCCGCTTACCGCCGATGACCTCGCCGCGTAGCCTGGACgg > 2:438423/1‑90 (MQ=255) ggCGGTAAAGGCATCGTCGTTCCGGCTGCGTGGGGCATGTTTACCTTCCGCTTACCGCCGATGACCTCGCCGCGTAGCCTGGACGGCGAc > 1:311575/1‑90 (MQ=255) gggCTGGGGGGGGCTTTTTTCCCTCCCGCTTACCGCCGATGACCTCGCCGCGTAGCCTGGACGGCGACCGCAAAATGGTGAGTGATTccc < 1:512233/89‑1 (MQ=255) gCGTGGGGCATGTTTCCCTTCCGCTTACCGCCGATGACCTCGCCGCGTAGCCTGGACGGCGACCGCAAAATGGTGAGTGATTCCCTgcgc < 1:114619/90‑1 (MQ=255) gCGTGGGGCATGTTTCCCTTCCGCTTACCGCCGATGACCTCGCCGCGTAGCCTGGACGGCGACCGCAAAATGGTGAGTGATTCCCTgcgc < 2:22592/90‑1 (MQ=255) gggCTTTTTTCCCTTCCGCTTACCGCCGATGACCTCGCCGCGTAGCCTGGACGGCGACCGCAAAATGGTGAGTGATTCCCTGCGCGTACt < 1:573813/90‑1 (MQ=255) gggCATGTTTACCTTCCGCTTACCGCCGATGACCTCGCcgcg < 1:522798/42‑1 (MQ=255) gggCATGTTTACCTTCCGCTTACCGCCGATGACCTCGCcgcg > 2:522798/1‑42 (MQ=255) | TCGAAGCGCTGGCAGAAGTGGGCGGTAAAGGCATCGTCGTTCCGGCTGCGTGGGGCATGTTTACCTTCCGCTTACCGCCGATGACCTCGCCGCGTAGCCTGGACGGCGACCGCAAAATGGTGAGTGATTCCCTGCGCGTACT > NZ_CP009273/1370544‑1370685 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |