Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2666830	2666840	11	7 [0]	[1] 5	yphA	DoxX family protein

CCGCCCCGTTTTGTTATTAATTGCCCGTATCGCCGTGGTCTTAATTTTCATTATTTTTGGTTTTCCCAAAATGATGGGCTTTGACGGTAC  >  NZ_CP009273/2666740‑2666829                                                                                          | ccgcccCGTTTTGTTATTAATTGCCCGTATCGCCGTGGTCTTAATTTTCATTATTTTTGGTTTTCCCAAAATGATGGGCTTTGacggtac  <  1:370832/90‑1 (MQ=255) ccgcccCGTTTTGTTATTAATTGCCCGTATCGCCGTGGTCTTAATTTTCATTATTTTTGGTTTTCCCAAAATGATGGGCTTTGacggtac  <  2:275745/90‑1 (MQ=255) ccgcccCGTTTTGTTATTAATTGCCCGTATCGCCGTGGTCTTAATTTTCATTATTTTTGGTTTTCCCAAAATGATGGGCTTTGacggtac  <  2:77289/90‑1 (MQ=255)                       gCCCGTATCGCCGTGGTCTTAATTTTCATTATTTTTGGTTTTCCCAAAATGATGGGCTTTGacggtac  >  1:21743/1‑68 (MQ=255)                       gCCCGTATCGCCGTGGTCTTAATTTTCATTATTTTTGGTTTTCCCAAAATGATGGGCTTTGacggtac  <  2:21743/68‑1 (MQ=255)                                     ggTCTTAATTTTCATTATTTTTGGTTTTCCCAAAATGATGGGCTTTGacggtac  <  1:352525/54‑1 (MQ=255)                                     ggTCTTAATTTTCATTATTTTTGGTTTTCCCAAAATGATGGGCTTTGacggtac  >  2:352525/1‑54 (MQ=255)                                                                                          | CCGCCCCGTTTTGTTATTAATTGCCCGTATCGCCGTGGTCTTAATTTTCATTATTTTTGGTTTTCCCAAAATGATGGGCTTTGACGGTAC  >  NZ_CP009273/2666740‑2666829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑