Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4496361	4496371	11	5 [0]	[1] 4	BW25113_RS25360	hypothetical protein

AAGAATTTTATCTTCGATAATCTCATAATTTTAGCAGTGCCATTTATGATAAAAACATCCCTTAAAACCAATCTAATCTTTTTCTTCCTC  >  NZ_CP009273/4496271‑4496360                                                                                          | aaGAATTTTATCTTCGATAATCTCATAATTTTAGCAGTGCCATTTATGATAAAAACATCCCTTAAAACCAATCTAATCTTTTTCTTCctc  <  1:209633/90‑1 (MQ=255) aaGAATTTTATCTTCGATAATCTCATAATTTTAGCAGTGCCATTTATGATAAAAACATCCCTTAAAACCAATCTAATCTTTTTCTTCctc  <  1:320742/90‑1 (MQ=255) aaGAATTTTATCTTCGATAATCTCATAATTTTAGCAGTGCCATTTATGATAAAAACATCCCTTAAAACCAATCTAATCTTTTTCTTCctc  <  1:412861/90‑1 (MQ=255) aaGAATTTTATCTTCGATAATCTCATAATTTTAGCAGTGCCATTTATGATAAAAACATCCCTTAAAACCAATCTAATCTTTTTCTTCctc  >  2:320742/1‑90 (MQ=255) aaGAATTTTATCTTCGATAATCTCATAATTTTAGCAGTGCCATTTATGATAAAAACATCCCTTAAAACCAATCTAATCTTTTTCTTCctc  <  2:467729/90‑1 (MQ=255)                                                                                          | AAGAATTTTATCTTCGATAATCTCATAATTTTAGCAGTGCCATTTATGATAAAAACATCCCTTAAAACCAATCTAATCTTTTTCTTCCTC  >  NZ_CP009273/4496271‑4496360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑