Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2099581	2099605	25	3 [1]	[0] 2	wzy	O16 family O‑antigen polymerase

AACTGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAA  >  NZ_CP009273/2099606‑2099653 |                                                aaCTGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATgaaagaaa  >  1:294979/1‑48 (MQ=255) aaCTGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATgaaagaaa  <  2:294979/48‑1 (MQ=255) |                                                AACTGCTAATATTAGTCATGAAGCTTTCATGATAAAAAATGAAAGAAA  >  NZ_CP009273/2099606‑2099653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑