Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2779798	2779816	19	2 [0]	[0] 2	BW25113_RS26005	alpha‑amylase family glycosyl hydrolase

GGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGA  >  NZ_CP009273/2779817‑2779862 |                                              ggAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGa  >  1:36524/1‑46 (MQ=255) ggAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGa  <  2:36524/46‑1 (MQ=255) |                                              GGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGA  >  NZ_CP009273/2779817‑2779862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑